ENSG00000133226


Homo sapiens

Features
Gene ID: ENSG00000133226
  
Biological name :SRRM1
  
Synonyms : Q8IYB3 / serine and arginine repetitive matrix 1 / SRRM1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: 1
Band: p36.11
Gene start: 24631716
Gene end: 24673267
  
Corresponding Affymetrix probe sets: 201224_s_at (Human Genome U133 Plus 2.0 Array)   201225_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000391430
Ensembl peptide - ENSP00000363510
Ensembl peptide - ENSP00000469151
Ensembl peptide - ENSP00000471819
Ensembl peptide - ENSP00000471084
Ensembl peptide - ENSP00000326261
NCBI entrez gene - 10250     See in Manteia.
OMIM - 605975
RefSeq - XM_017000033
RefSeq - XM_017000023
RefSeq - XM_017000024
RefSeq - XM_017000025
RefSeq - XM_017000026
RefSeq - XM_017000027
RefSeq - XM_017000028
RefSeq - XM_017000029
RefSeq - XM_017000030
RefSeq - XM_017000031
RefSeq - XM_017000032
RefSeq - NM_001303448
RefSeq - NM_001303449
RefSeq - NM_005839
RefSeq - XM_005245717
RefSeq - XM_005245718
RefSeq - XM_005245720
RefSeq - XM_005245721
RefSeq - XM_005245722
RefSeq - XM_011540478
RefSeq - XM_011540479
RefSeq - XM_011540480
RefSeq - XM_011540481
RefSeq - XM_011540482
RefSeq - XM_011540483
RefSeq - XM_017000011
RefSeq - XM_017000012
RefSeq - XM_017000013
RefSeq - XM_017000014
RefSeq - XM_017000015
RefSeq - XM_017000016
RefSeq - XM_017000017
RefSeq - XM_017000018
RefSeq - XM_017000019
RefSeq - XM_017000020
RefSeq - XM_017000021
RefSeq - XM_017000022
RefSeq Peptide - NP_001290378
RefSeq Peptide - NP_005830
RefSeq Peptide - NP_001290377
swissprot - M0R088
swissprot - M0R1E7
swissprot - E9PCT1
swissprot - Q8IYB3
swissprot - A0A0S2Z4W1
swissprot - A9Z1X7
swissprot - M0QXG5
Ensembl - ENSG00000133226
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 srrm1ENSDARG00000001244Danio rerio
 SRRM1ENSGALG00000001283Gallus gallus
 Srrm1ENSMUSG00000028809Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002483  PWI domain
 IPR036483  PWI domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000375 RNA splicing, via transesterification reactions TAS
 biological_processGO:0000398 mRNA splicing, via spliceosome TAS
 biological_processGO:0006369 termination of RNA polymerase II transcription TAS
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0006405 RNA export from nucleus TAS
 biological_processGO:0006406 mRNA export from nucleus TAS
 biological_processGO:0008380 RNA splicing TAS
 biological_processGO:0031124 mRNA 3"-end processing TAS
 cellular_componentGO:0005634 nucleus TAS
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0016363 nuclear matrix IEA
 cellular_componentGO:0016607 nuclear speck IDA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IDA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
Transport of Mature mRNA derived from an Intron-Containing Transcript
mRNA Splicing - Major Pathway
mRNA 3-end processing


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000167978 SRRM2 / Q9UQ35 / serine/arginine repetitive matrix 2  / complex






 

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