ENSMUSG00000028809


Mus musculus

Features
Gene ID: ENSMUSG00000028809
  
Biological name :Srrm1
  
Synonyms : serine and arginine repetitive matrix 1 / Srrm1
  
Possible biological names infered from orthology : Q8IYB3
  
Species: Mus musculus
  
Chr. number: 4
Strand: -1
Band: D3
Gene start: 135320484
Gene end: 135353321
  
Corresponding Affymetrix probe sets: 10517345 (MoGene1.0st)   1420934_a_at (Mouse Genome 430 2.0 Array)   1420935_a_at (Mouse Genome 430 2.0 Array)   1442330_at (Mouse Genome 430 2.0 Array)   1447447_s_at (Mouse Genome 430 2.0 Array)   1450045_at (Mouse Genome 430 2.0 Array)   1454689_at (Mouse Genome 430 2.0 Array)   1459828_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000120952
Ensembl peptide - ENSMUSP00000101487
Ensembl peptide - ENSMUSP00000122754
Ensembl peptide - ENSMUSP00000125477
Ensembl peptide - ENSMUSP00000125003
Ensembl peptide - ENSMUSP00000124450
Ensembl peptide - ENSMUSP00000030613
Ensembl peptide - ENSMUSP00000081906
NCBI entrez gene - 51796     See in Manteia.
MGI - MGI:1858303
RefSeq - XM_017320313
RefSeq - NM_016799
RefSeq - XM_006539026
RefSeq - XM_006539027
RefSeq - XM_006539028
RefSeq - XM_006539029
RefSeq - XM_006539030
RefSeq - XM_006539031
RefSeq - XM_006539032
RefSeq - XM_006539033
RefSeq - XM_011250301
RefSeq - NM_001130477
RefSeq Peptide - NP_058079
RefSeq Peptide - NP_001123949
swissprot - A2A983
swissprot - F6T4M4
swissprot - F6UK16
swissprot - E9QKA4
swissprot - A2A8V9
swissprot - A2A8V8
swissprot - F7BWM1
swissprot - E9PUK6
Ensembl - ENSMUSG00000028809
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 srrm1ENSDARG00000001244Danio rerio
 SRRM1ENSGALG00000001283Gallus gallus
 SRRM1ENSG00000133226Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002483  PWI domain
 IPR036483  PWI domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006397 mRNA processing IEA
 cellular_componentGO:0016607 nuclear speck IEA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IEA


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
Transport of Mature mRNA derived from an Intron-Containing Transcript
mRNA Splicing - Major Pathway
mRNA 3-end processing


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr