ENSMUSG00000039701


Mus musculus

Features
Gene ID: ENSMUSG00000039701
  
Biological name :Usp53
  
Synonyms : P15975 / ubiquitin specific peptidase 53 / Usp53
  
Possible biological names infered from orthology : Q70EK8
  
Species: Mus musculus
  
Chr. number: 3
Strand: -1
Band: G1
Gene start: 122931493
Gene end: 122984510
  
Corresponding Affymetrix probe sets: 10501879 (MoGene1.0st)   1444507_at (Mouse Genome 430 2.0 Array)   1446572_at (Mouse Genome 430 2.0 Array)   1452385_at (Mouse Genome 430 2.0 Array)   1458899_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000087857
Ensembl peptide - ENSMUSP00000143119
Ensembl peptide - ENSMUSP00000143412
Ensembl peptide - ENSMUSP00000143460
Ensembl peptide - ENSMUSP00000142600
NCBI entrez gene - 99526     See in Manteia.
MGI - MGI:2139607
RefSeq - XM_017319820
RefSeq - NM_133857
RefSeq - XM_011240313
RefSeq - XM_011240314
RefSeq - XM_011240315
RefSeq - XM_011240316
RefSeq - XM_011240317
RefSeq Peptide - NP_598618
swissprot - A0A0G2JG80
swissprot - A0A0G2JFC5
swissprot - P15975
swissprot - Q3USD9
swissprot - Q8BSX5
Ensembl - ENSMUSG00000039701
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 USP53 (1 of many)ENSDARG00000078615Danio rerio
 usp53bENSDARG00000076499Danio rerio
 USP53ENSGALG00000011990Gallus gallus
 USP53ENSG00000145390Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Usp54 / Q8BL06 / ubiquitin specific peptidase 54 / Q70EL1*ENSMUSG0000003423529


Protein motifs (from Interpro)
Interpro ID Name
 IPR001394  Peptidase C19, ubiquitin carboxyl-terminal hydrolase
 IPR028889  Ubiquitin specific protease domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001508 action potential IMP
 biological_processGO:0006915 apoptotic process IMP
 biological_processGO:0007605 sensory perception of sound IMP
 biological_processGO:0008150 biological_process ND
 biological_processGO:0010996 response to auditory stimulus IMP
 biological_processGO:0016579 protein deubiquitination IEA
 biological_processGO:0051402 neuron apoptotic process IMP
 cellular_componentGO:0005575 cellular_component ND
 cellular_componentGO:0005911 cell-cell junction IDA
 cellular_componentGO:0005923 bicellular tight junction IEA
 cellular_componentGO:0030054 cell junction IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0000043 organ of Corti degeneration "a retrogressive impairment of function or destruction of the highly specialized epithelium in the floor of the ductus cochlearis" [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator]
Show

Allelic Composition: Enamtm1.1Jcch/Enam+
Genetic Background: involves: C57BL/6

 MP:0001489 decreased startle reflex "greater threshold or less severe reflex response to variable stimuli, often auditory; usually measured by amplitude of whole body flinch" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator, What s Wrong With My Mouse?:ISBN 0-471-31639-3]
Show

Allelic Composition: Myo7apolka/Myo7apolka
Genetic Background: involves: C57BL/6J

 MP:0001967 deafness "inability to hear" [J:57651]
Show

Allelic Composition: Enamtm1.1Jcch/Enam+
Genetic Background: involves: C57BL/6

 MP:0002857 cochlear ganglion degeneration "loss of neural cell bodies in the group of nerve cell bodies that conveys auditory sensation from the organ of Corti to the hindbrain" [Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8]
Show

Allelic Composition: Enamtm1.1Jcch/Enam+
Genetic Background: involves: C57BL/6

 MP:0004362 cochlear hair cell degeneration "degeneration or loss of the sensory epithelial cells of the cochlea; these cells are in synaptic contact with the auditory nerve" [ISBN:0-683-40008-8 "Stedman s Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Enamtm1.1Jcch/Enam+
Genetic Background: involves: C57BL/6

 MP:0004398 cochlear inner hair cell degeneration "degeneration or loss of the single row of flask-shaped inner hair sensory cells of the organ of Corti" [MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Enamtm1.1Jcch/Enam+
Genetic Background: involves: C57BL/6

 MP:0004399 abnormal cochlear outer hair cell morphology "any structural abnormality in the sensory cells of the organ of Corti which are in synaptic contact with sensory as well as efferent fibers of the auditory nerve; there are three rows of columnar outer hair cells largely surrounded by cortilymph and supporting phalangeal cells; the apical end of each cell is anchored to the cuticular plate and about 100 stereocilia arranged in a V-shaped pattern extend from the cell s surface through the cuticular plate into the tectorial membrane" [MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Enamtm1.1Jcch/Enam+
Genetic Background: involves: C57BL/6

 MP:0004404 cochlear outer hair cell degeneration "degeneration or loss of the columnar outer hair sensory cells of the organ of Corti" [MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Enamtm1.1Jcch/Enam+
Genetic Background: involves: C57BL/6

 MP:0004411 decreased endocochlear potential "reduction of the electrical potential difference between the endolymphatic and perilymphatic compartments of the cochlea" [MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Enamtm1.1Jcch/Enam+
Genetic Background: involves: C57BL/6

 MP:0004491 abnormal orientation of outer hair cell stereociliary bundles "misorientation or rotation of outer hair cell (OHC) stereociliary bundles, resulting in defective planar cell polarity of the inner ear sensory epithelium " [MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Enamtm1.1Jcch/Enam+
Genetic Background: involves: C57BL/6

 MP:0004528 fused outer hair cell stereocilia "coalescence of the nonmotile, actin-filled specialized microvilli (stereocilia) normally arrayed on cochlear outer hair cells, often resulting in giant stereocilia" [MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Enamtm1.1Jcch/Enam+
Genetic Background: involves: C57BL/6

 MP:0004597 increased susceptibility to noise-induced hearing loss "greater than normal reduction in hearing sensitivity following exposure to acute noise that is injurious to the cochlea" [MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Usp53mbo/Usp53mbo
Genetic Background: involves: BALB/cByJ * C57BL/6J

 MP:0004628 Dieters cell degeneration "degeneration or loss of the supporting cells of the spiral organ which are attached to the basement membrane and receive the hair cells between their free extremities" [MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Enamtm1.1Jcch/Enam+
Genetic Background: involves: C57BL/6

 MP:0004737 absent distortion product otoacoustic emissions "failure to create mechanical distortions in the inner ear when two primary tones are presented, indicating failure of outer hair cells to amplify basilar membrane motion" [MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Enamtm1.1Jcch/Enam+
Genetic Background: involves: C57BL/6

 MP:0004749 nonsyndromic hearing loss "a form of progressive hearing loss that is not associated with visible abnormalities of the external ear or other signs and symptoms; the vast majority of hereditary hearing loss is nonsyndromic and can be associated with abnormalities of the middle ear and/or inner ear" [MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Enamtm1.1Jcch/Enam+
Genetic Background: involves: C57BL/6

 MP:0011967 increased or absent threshold for auditory brainstem response "increase in the value at which one or more sound frequencies or broadband clicks first elicits a recordable response generated by electrical activity of neurons in the ascending auditory system, or complete lack of a recordable response at any frequency or broadband click" [MGI:csmith]
Show

Allelic Composition: Myo7apolka/Myo7apolka
Genetic Background: involves: C57BL/6J

Allelic Composition: Usp53mbo/Usp53mbo
Genetic Background: involves: BALB/cByJ * C57BL/6J

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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