ENSMUSG00000039706


Mus musculus

Features
Gene ID: ENSMUSG00000039706
  
Biological name :Ldb2
  
Synonyms : Ldb2 / Mus musculus LIM domain binding 2 (Ldb2), transcript variant 5, mRNA. / O55203
  
Possible biological names infered from orthology : LIM domain binding 2 / O43679
  
Species: Mus musculus
  
Chr. number: 5
Strand: -1
Band: B3
Gene start: 44472132
Gene end: 44799680
  
Corresponding Affymetrix probe sets: 10529875 (MoGene1.0st)   1421101_a_at (Mouse Genome 430 2.0 Array)   1439557_s_at (Mouse Genome 430 2.0 Array)   1456786_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000067737
Ensembl peptide - ENSMUSP00000142442
Ensembl peptide - ENSMUSP00000143289
Ensembl peptide - ENSMUSP00000143775
NCBI entrez gene - 16826     See in Manteia.
MGI - MGI:894670
RefSeq - XM_017320689
RefSeq - NM_001077398
RefSeq - NM_001286348
RefSeq - NM_001347349
RefSeq - NM_001359070
RefSeq - NM_010698
RefSeq - XM_006503753
RefSeq - XM_006503754
RefSeq - XM_006503755
RefSeq - XM_006503756
RefSeq - XM_006503757
RefSeq - XM_006503758
RefSeq - XM_017320688
RefSeq - XM_006503752
RefSeq Peptide - NP_001070866
RefSeq Peptide - NP_001273277
RefSeq Peptide - NP_001334278
RefSeq Peptide - NP_001345999
RefSeq Peptide - NP_034828
swissprot - O55203
swissprot - A0A0G2JFS7
Ensembl - ENSMUSG00000039706
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ldb2aENSDARG00000019579Danio rerio
 ldb2bENSDARG00000034896Danio rerio
 LDB2ENSGALG00000014485Gallus gallus
 LDB2ENSG00000169744Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Ldb1 / P70662 / LIM domain-binding protein 1 / Q86U70* / LIM domain binding 1*ENSMUSG0000002522374


Protein motifs (from Interpro)
Interpro ID Name
 IPR029005  LIM-domain binding protein/SEUSS
 IPR030174  LIM domain-binding protein 2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001942 hair follicle development IGI
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0010669 epithelial structure maintenance IGI
 biological_processGO:0030334 regulation of cell migration IMP
 biological_processGO:0035019 somatic stem cell population maintenance IGI
 biological_processGO:0043549 regulation of kinase activity IDA
 biological_processGO:0044089 positive regulation of cellular component biogenesis IGI
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IGI
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005667 transcription factor complex IDA
 cellular_componentGO:0005730 nucleolus ISO
 cellular_componentGO:0005886 plasma membrane ISO
 cellular_componentGO:0031252 cell leading edge IDA
 molecular_functionGO:0000989 transcription factor activity, transcription factor binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0019899 enzyme binding IPI
 molecular_functionGO:0030274 LIM domain binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0002169 no phenotype detected "normal, viable and fertile appearance and behavior; indistinguishable from controls" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
Show

Allelic Composition: Casp9tm1Flv/Casp9tm1Flv
Genetic Background: B6.129S1-Casp9tm1Flv

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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