ENSMUSG00000039771


Mus musculus

Features
Gene ID: ENSMUSG00000039771
  
Biological name :Polr2j
  
Synonyms : Polr2j / polymerase (RNA) II (DNA directed) polypeptide J
  
Possible biological names infered from orthology : P52435 / RNA polymerase II subunit J
  
Species: Mus musculus
  
Chr. number: 5
Strand: 1
Band: G2
Gene start: 136116631
Gene end: 136122947
  
Corresponding Affymetrix probe sets: 10526482 (MoGene1.0st)   1417720_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000038505
Ensembl peptide - ENSMUSP00000106759
Ensembl peptide - ENSMUSP00000106757
NCBI entrez gene - 20022     See in Manteia.
MGI - MGI:109582
RefSeq - NM_011293
RefSeq Peptide - NP_035423
swissprot - D3YZ20
swissprot - D3YZ19
swissprot - Q6PI63
Ensembl - ENSMUSG00000039771
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 polr2jENSDARG00000035146Danio rerio
 POLR2JENSGALG00000030808Gallus gallus
 P52435ENSG00000005075Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR008193  DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site
 IPR009025  DNA-directed RNA polymerase, RBP11-like dimerisation domain
 IPR036603  RNA polymerase, RBP11-like subunit


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005665 DNA-directed RNA polymerase II, core complex IEA
 molecular_functionGO:0001055 RNA polymerase II activity IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003899 DNA-directed 5"-3" RNA polymerase activity IEA
 molecular_functionGO:0030275 LRR domain binding IEA
 molecular_functionGO:0046983 protein dimerization activity IEA


Pathways (from Reactome)
Pathway description
Formation of RNA Pol II elongation complex
Formation of the Early Elongation Complex
Transcriptional regulation by small RNAs
RNA Polymerase II Pre-transcription Events
Formation of TC-NER Pre-Incision Complex
Dual incision in TC-NER
Gap-filling DNA repair synthesis and ligation in TC-NER
TP53 Regulates Transcription of DNA Repair Genes
FGFR2 alternative splicing
RNA polymerase II transcribes snRNA genes
mRNA Capping
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway
Processing of Capped Intron-Containing Pre-mRNA
RNA Polymerase II Promoter Escape
RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
RNA Polymerase II Transcription Initiation
RNA Polymerase II Transcription Elongation
RNA Polymerase II Transcription Initiation And Promoter Clearance
RNA Pol II CTD phosphorylation and interaction with CE
Estrogen-dependent gene expression


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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