ENSDARG00000035146


Danio rerio

Features
Gene ID: ENSDARG00000035146
  
Biological name :polr2j
  
Synonyms : polr2j / polymerase (RNA) II (DNA directed) polypeptide J
  
Possible biological names infered from orthology : AC105052.3 / P52435 / POLR2J2 / POLR2J3 / Q9GZM3 / Q9H1A7 / RNA polymerase II subunit J / RNA polymerase II subunit J2 / RNA polymerase II subunit J3
  
Species: Danio rerio
  
Chr. number: 5
Strand: 1
Band:
Gene start: 61459422
Gene end: 61465028
  
Corresponding Affymetrix probe sets: Dr.17997.1.S1_at (Zebrafish Array)   NM_001024400_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000050901
NCBI entrez gene - 554099     See in Manteia.
RefSeq - NM_001024400
RefSeq Peptide - NP_001019571
swissprot - Q4VBU5
ZFIN ID - ZDB-GENE-050522-120
Ensembl - ENSDARG00000035146
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 POLR2JENSGALG00000030808Gallus gallus
 AC105052.3ENSG00000267645Homo sapiens
 P52435ENSG00000005075Homo sapiens
 POLR2J3ENSG00000285437Homo sapiens
 Q9GZM3ENSG00000228049Homo sapiens
 Q9H1A7ENSG00000168255Homo sapiens
 Polr2jENSMUSG00000039771Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR008193  DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site
 IPR009025  DNA-directed RNA polymerase, RBP11-like dimerisation domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 cellular_componentGO:0005665 DNA-directed RNA polymerase II, core complex IBA
 molecular_functionGO:0001055 RNA polymerase II activity IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003899 DNA-directed 5"-3" RNA polymerase activity IEA
 molecular_functionGO:0046983 protein dimerization activity IEA


Pathways (from Reactome)
Pathway description
Formation of RNA Pol II elongation complex
Formation of the Early Elongation Complex
Transcriptional regulation by small RNAs
RNA Polymerase II Pre-transcription Events
Formation of TC-NER Pre-Incision Complex
Dual incision in TC-NER
Gap-filling DNA repair synthesis and ligation in TC-NER
TP53 Regulates Transcription of DNA Repair Genes
FGFR2 alternative splicing
RNA polymerase II transcribes snRNA genes
mRNA Capping
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway
Processing of Capped Intron-Containing Pre-mRNA
RNA Polymerase II Promoter Escape
RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
RNA Polymerase II Transcription Initiation
RNA Polymerase II Transcription Elongation
RNA Polymerase II Transcription Initiation And Promoter Clearance
RNA Pol II CTD phosphorylation and interaction with CE
Estrogen-dependent gene expression


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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