ENSMUSG00000040565


Mus musculus

Features
Gene ID: ENSMUSG00000040565
  
Biological name :Btaf1
  
Synonyms : Btaf1 / B-TFIID TATA-box binding protein associated factor 1
  
Possible biological names infered from orthology : O14981
  
Species: Mus musculus
  
Chr. number: 19
Strand: 1
Band: C2
Gene start: 36926079
Gene end: 37012752
  
Corresponding Affymetrix probe sets: 10462752 (MoGene1.0st)   1435248_a_at (Mouse Genome 430 2.0 Array)   1435249_at (Mouse Genome 430 2.0 Array)   1435953_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000097093
NCBI entrez gene - 107182     See in Manteia.
MGI - MGI:2147538
RefSeq - NM_001080706
RefSeq - XM_006526561
RefSeq Peptide - NP_001074175
swissprot - E9QAE3
Ensembl - ENSMUSG00000040565
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 btaf1ENSDARG00000060089Danio rerio
 BTAF1ENSGALG00000030598Gallus gallus
 BTAF1ENSG00000095564Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q8BJL0 / Smarcal1 / SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 / Q9NZC9* / SWI/SNF related, matrix associated, actin dependent regu...ENSMUSG0000003935411
Q6NZP1 / Zranb3 / zinc finger, RAN-binding domain containing 3 / Q5FWF4* / zinc finger RANBP2-type containing 3*ENSMUSG000000360868


Protein motifs (from Interpro)
Interpro ID Name
 IPR000330  SNF2-related, N-terminal domain
 IPR001650  Helicase, C-terminal
 IPR011989  Armadillo-like helical
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR016024  Armadillo-type fold
 IPR022707  Domain of unknown function DUF3535
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0035562 negative regulation of chromatin binding IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IEA
 molecular_functionGO:0003674 molecular_function ND
 molecular_functionGO:0005488 binding IEA
 molecular_functionGO:0005524 ATP binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0000913 abnormal brain development "malformed or incomplete differentiation of the brain" [MGI:cls, J:49840]
Show

Allelic Composition: Rac1tm2Tyb/Rac1tm2Tyb,Tg(Hhex-EGFP)#Rbe/0
Genetic Background: mixed

 MP:0001730 embryonic growth arrest "the cessation of development beyond a particular stage" [J:17509]
Show

Allelic Composition: Rac1tm2Tyb/Rac1tm2Tyb,Tg(Hhex-EGFP)#Rbe/0
Genetic Background: mixed

 MP:0001785 edema "an accumulation of an excessive amount of watery fluid in cells or intercellular tissues" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:54065]
Show

Allelic Composition: Rac1tm2Tyb/Rac1tm2Tyb,Tg(Hhex-EGFP)#Rbe/0
Genetic Background: mixed

Allelic Composition: Btaf1m1Fme/Btaf1Gt(RRF308)Byg
Genetic Background: involves: 129P2/OlaHsd * C57BL/6 * FVB/N

 MP:0002128 abnormal blood circulation "failure or atypical movement in the flow of blood from the heart to the vasculature and back to the heart" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
Show

Allelic Composition: Rac1tm2Tyb/Rac1tm2Tyb,Tg(Hhex-EGFP)#Rbe/0
Genetic Background: mixed

 MP:0003984 embryonic growth retardation "slow or limited development before birth" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
Show

Allelic Composition: Rac1tm2Tyb/Rac1tm2Tyb,Tg(Hhex-EGFP)#Rbe/0
Genetic Background: mixed

Allelic Composition: Btaf1Gt(RRF308)Byg/Btaf1Gt(RRF308)Byg
Genetic Background: involves: 129P2/OlaHsd

 MP:0010503 myocardial trabeculae hypoplasia "underdevelopment or reduced size of the supporting bundles of muscular fibers lining the walls of the heart, usually due to a reduced number of cells" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Rac1tm2Tyb/Rac1tm2Tyb,Tg(Hhex-EGFP)#Rbe/0
Genetic Background: mixed

 MP:0012177 delayed head development "late onset of the induction and/or differentiation of the head" [MGI:anna]
Show

Allelic Composition: Rac1tm2Tyb/Rac1tm2Tyb,Tg(Hhex-EGFP)#Rbe/0
Genetic Background: mixed

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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