ENSMUSG00000040596


Mus musculus

Features
Gene ID: ENSMUSG00000040596
  
Biological name :Pogk
  
Synonyms : Pogk / pogo transposable element with KRAB domain
  
Possible biological names infered from orthology : pogo transposable element derived with KRAB domain / Q9P215
  
Species: Mus musculus
  
Chr. number: 1
Strand: -1
Band: H2.3
Gene start: 166384622
Gene end: 166409863
  
Corresponding Affymetrix probe sets: 10359816 (MoGene1.0st)   1447864_s_at (Mouse Genome 430 2.0 Array)   1456782_at (Mouse Genome 430 2.0 Array)   1459896_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000118270
Ensembl peptide - ENSMUSP00000127395
Ensembl peptide - ENSMUSP00000120963
Ensembl peptide - ENSMUSP00000120352
Ensembl peptide - ENSMUSP00000118877
Ensembl peptide - ENSMUSP00000116477
NCBI entrez gene - 71592     See in Manteia.
MGI - MGI:1918842
RefSeq - XM_017312357
RefSeq - NM_001142948
RefSeq - NM_175170
RefSeq - XM_011238869
RefSeq Peptide - NP_780379
RefSeq Peptide - NP_001136420
swissprot - E9Q3B2
swissprot - D3YZK0
swissprot - A0A0R4J1T0
swissprot - D6RH56
Ensembl - ENSMUSG00000040596
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 BX914205.2ENSDARG00000099590Danio rerio
 CR352209.1ENSDARG00000103972Danio rerio
 CR354398.1ENSDARG00000101994Danio rerio
 POGKENSG00000143157Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001909  Krueppel-associated box
 IPR004875  DDE superfamily endonuclease domain
 IPR006600  HTH CenpB-type DNA-binding domain
 IPR009057  Homeobox-like domain superfamily
 IPR018586  Brinker DNA-binding domain
 IPR036051  KRAB domain superfamily
 IPR036388  Winged helix-like DNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005622 intracellular IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr