ENSMUSG00000042496


Mus musculus

Features
Gene ID: ENSMUSG00000042496
  
Biological name :Prdm10
  
Synonyms : Prdm10 / PR domain zinc finger protein 10 / Q3UTQ7
  
Possible biological names infered from orthology : PR/SET domain 10 / Q9NQV6
  
Species: Mus musculus
  
Chr. number: 9
Strand: 1
Band: A4
Gene start: 31280538
Gene end: 31381723
  
Corresponding Affymetrix probe sets: 10584071 (MoGene1.0st)   1429689_at (Mouse Genome 430 2.0 Array)   1441764_at (Mouse Genome 430 2.0 Array)   1444812_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000149526
Ensembl peptide - ENSMUSP00000149699
Ensembl peptide - ENSMUSP00000074104
Ensembl peptide - ENSMUSP00000112588
NCBI entrez gene - 382066     See in Manteia.
MGI - MGI:2682952
RefSeq - XM_006510471
RefSeq - XM_006510466
RefSeq - XM_006510467
RefSeq - XM_006510468
RefSeq - XM_006510469
RefSeq - XM_006510470
RefSeq - NM_001080817
RefSeq - XM_006510464
RefSeq - XM_006510465
RefSeq Peptide - NP_001074286
swissprot - D3YYD1
swissprot - A0A1L1SS03
swissprot - A0A1L1SRM4
swissprot - Q3UTQ7
Ensembl - ENSMUSG00000042496
  

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 prdm10ENSDARG00000104251Danio rerio
 ENSGALG00000033660Gallus gallus
 PRDM10ENSG00000170325Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Prdm15 / Mus musculus PR domain containing 15 (Prdm15), transcript variant 2, mRNA. / P57071* / PR/SET domain 15*ENSMUSG0000001403921


Protein motifs (from Interpro)
Interpro ID Name
 IPR001214  SET domain
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013087  Zinc finger C2H2-type
 IPR022755  Zinc finger, double-stranded RNA binding
 IPR026939  At2g23090-like
 IPR036236  Zinc finger C2H2 superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0008150 biological_process ND
 biological_processGO:0032259 methylation IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0008168 methyltransferase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0003960 increased lean body mass "more than average fat-free physical bulk or volume of the body including all its components except adipose tissue" [honda:Hiraoki Onda, Mouse GEnome Informatics Curator]
Show

Allelic Composition: Ppargtm1b(KOMP)Wtsi/Ppargtm1b(KOMP)Wtsi
Genetic Background: C57BL/6N-Ppargtm1b(KOMP)Wtsi/H

 MP:0010025 decreased total body fat amount "less than the normal total amount of connective tissue composed of fat cells within the entire body" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Ppargtm1b(KOMP)Wtsi/Ppargtm1b(KOMP)Wtsi
Genetic Background: C57BL/6N-Ppargtm1b(KOMP)Wtsi/H

 MP:0011100 complete preweaning lethality "death of all organisms of a given genotype in a population between fertilization and weaning age (Mus: approximately 3-4 weeks of age)" [MGI:csmith]
Show

Allelic Composition: Ppargtm1b(KOMP)Wtsi/Ppargtm1b(KOMP)Wtsi
Genetic Background: C57BL/6N-Ppargtm1b(KOMP)Wtsi/H

 MP:0013293 embryonic lethality prior to tooth bud stage "death prior to the appearance of tooth buds (Mus: E12-E12.5)" [MGI:smb]
Show

Allelic Composition: Ppargtm1b(KOMP)Wtsi/Ppargtm1b(KOMP)Wtsi
Genetic Background: C57BL/6N-Ppargtm1b(KOMP)Wtsi/H

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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