ENSMUSG00000047260


Mus musculus

Features
Gene ID: ENSMUSG00000047260
  
Biological name :Emc6
  
Synonyms : Emc6 / ER membrane protein complex subunit 6 / Q9CQW0
  
Possible biological names infered from orthology : Q9BV81
  
Species: Mus musculus
  
Chr. number: 11
Strand: -1
Band: B4
Gene start: 73175519
Gene end: 73177037
  
Corresponding Affymetrix probe sets: 10388238 (MoGene1.0st)   1417912_at (Mouse Genome 430 2.0 Array)   1448882_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000060892
Ensembl peptide - ENSMUSP00000104120
NCBI entrez gene - 66048     See in Manteia.
MGI - MGI:1913298
RefSeq - NM_001168470
RefSeq - NM_025318
RefSeq Peptide - NP_001161942
RefSeq Peptide - NP_079594
swissprot - Q9CQW0
Ensembl - ENSMUSG00000047260
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 emc6ENSDARG00000035282Danio rerio
 EMC6ENSGALG00000026492Gallus gallus
 EMC6ENSG00000127774Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR008504  ER membrane protein complex subunit 6
 IPR029008  Rab5-interacting protein family


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000045 autophagosome assembly ISO
 biological_processGO:0034975 protein folding in endoplasmic reticulum IBA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane ISO
 cellular_componentGO:0030176 integral component of endoplasmic reticulum membrane ISO
 cellular_componentGO:0072546 ER membrane protein complex ISO
 cellular_componentGO:0097631 integral component of omegasome membrane ISO
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0001297 microphthalmia "reduced average size of the eyes" [J:18048]
Show

Allelic Composition: Dolkem1(IMPC)J/Dolkem1(IMPC)J
Genetic Background: C57BL/6NJ-Dolkem1(IMPC)J/J

 MP:0002092 abnormal eye morphology "abnormal development of the eye tissues resulting in morphological abnormality or abnormal structure of the visual system" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
Show

Allelic Composition: Dolkem1(IMPC)J/Dolkem1(IMPC)J
Genetic Background: C57BL/6NJ-Dolkem1(IMPC)J/J

 MP:0002697 abnormal eye size "anomalous bulk of the organ of vision" [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator]
Show

Allelic Composition: Dolkem1(IMPC)J/Dolkem1(IMPC)J
Genetic Background: C57BL/6NJ-Dolkem1(IMPC)J/J

 MP:0013292 embryonic lethality prior to organogenesis "death prior to the completion of embryo turning (Mus: E9-9.5)" [MGI:smb]
Show

Allelic Composition: Dbn1tm1b(KOMP)Wtsi/Dbn1+
Genetic Background: C57BL/6N-Dbn1tm1b(KOMP)Wtsi/Bay

 MP:0013293 embryonic lethality prior to tooth bud stage "death prior to the appearance of tooth buds (Mus: E12-E12.5)" [MGI:smb]
Show

Allelic Composition: Dbn1tm1b(KOMP)Wtsi/Dbn1+
Genetic Background: C57BL/6N-Dbn1tm1b(KOMP)Wtsi/Bay

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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