ENSMUSG00000050213


Mus musculus

Features
Gene ID: ENSMUSG00000050213
  
Biological name :Snip1
  
Synonyms : Q8BIZ6 / Smad nuclear-interacting protein 1 / Snip1
  
Possible biological names infered from orthology : Q8TAD8
  
Species: Mus musculus
  
Chr. number: 4
Strand: 1
Band: D2.2
Gene start: 125066672
Gene end: 125074042
  
Corresponding Affymetrix probe sets: 10508036 (MoGene1.0st)   1428133_at (Mouse Genome 430 2.0 Array)   1459773_x_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000060721
NCBI entrez gene - 76793     See in Manteia.
MGI - MGI:2156003
RefSeq - NM_175246
RefSeq - XM_011240648
RefSeq Peptide - NP_780455
swissprot - Q8BIZ6
Ensembl - ENSMUSG00000050213
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 snip1ENSDARG00000087528Danio rerio
 SNIP1ENSGALG00000002010Gallus gallus
 SNIP1ENSG00000163877Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Slc4a1ap / solute carrier family 4 (anion exchanger), member 1, adaptor protein / Q9BWU0* / solute carrier family 4 member 1 adaptor protein*ENSMUSG0000002914113
Ppp1r8 / Q8R3G1 / Nuclear inhibitor of protein phosphatase 1 / Q12972* / protein phosphatase 1 regulatory subunit 8*ENSMUSG0000002888210


Protein motifs (from Interpro)
Interpro ID Name
 IPR000253  Forkhead-associated (FHA) domain
 IPR008984  SMAD/FHA domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IDA
 biological_processGO:0007249 I-kappaB kinase/NF-kappaB signaling IDA
 biological_processGO:0031047 gene silencing by RNA IEA
 biological_processGO:0035196 production of miRNAs involved in gene silencing by miRNA IEA
 biological_processGO:1903955 positive regulation of protein targeting to mitochondrion IEA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 molecular_functionGO:0003729 mRNA binding IBA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0004924 abnormal behavior "anomalies in the actions, reactions, or performance of an organism in response to external or internal stimuli compared to controls" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Smstm1a(EUCOMM)Wtsi/Y
Genetic Background: B6JTyr;B6N-Smstm1a(EUCOMM)Wtsi/Wtsi

 MP:0005567 decreased circulating total protein level "less than the average total concentration of these macromolecules in the blood " [RGD:Rat Genome Database submission]
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Allelic Composition: Smstm1a(EUCOMM)Wtsi/Y
Genetic Background: B6JTyr;B6N-Smstm1a(EUCOMM)Wtsi/Wtsi

 MP:0006241 abnormal placement of pupils "abnormal location of the pupil so that it is not in the center of the iris" [ncbi:Matthew Mailman, NCBI request, smb:Susan M Bello, Mouse Genome Informatics Curator]
Show

Allelic Composition: Smoc1tm1a(EUCOMM)Wtsi/Smoc1+
Genetic Background: C57BL/6N-Smoc1tm1a(EUCOMM)Wtsi/H

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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