ENSMUSG00000050244


Mus musculus

Features
Gene ID: ENSMUSG00000050244
  
Biological name :Heatr1
  
Synonyms : Heatr1 / HEAT repeat containing 1
  
Possible biological names infered from orthology : Q9H583
  
Species: Mus musculus
  
Chr. number: 13
Strand: 1
Band: A1
Gene start: 12395027
Gene end: 12440289
  
Corresponding Affymetrix probe sets: 10403511 (MoGene1.0st)   1424522_at (Mouse Genome 430 2.0 Array)   1437965_at (Mouse Genome 430 2.0 Array)   1452419_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000152410
Ensembl peptide - ENSMUSP00000152797
Ensembl peptide - ENSMUSP00000152435
Ensembl peptide - ENSMUSP00000054084
NCBI entrez gene - 217995     See in Manteia.
MGI - MGI:2442524
RefSeq - NM_144835
RefSeq Peptide - NP_659084
swissprot - A0A1Y7VNI1
swissprot - A0A1Y7VNG8
swissprot - G3X9B1
Ensembl - ENSMUSG00000050244
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 heatr1ENSDARG00000099742Danio rerio
 HEATR1ENSGALG00000032799Gallus gallus
 HEATR1ENSG00000119285Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR011989  Armadillo-like helical
 IPR012954  BP28, C-terminal domain
 IPR016024  Armadillo-type fold
 IPR022125  U3 small nucleolar RNA-associated protein 10


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
 biological_processGO:0045943 positive regulation of transcription by RNA polymerase I ISO
 biological_processGO:2000234 positive regulation of rRNA processing ISO
 cellular_componentGO:0001650 fibrillar center ISO
 cellular_componentGO:0005730 nucleolus ISO
 cellular_componentGO:0005739 mitochondrion ISO
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030686 90S preribosome IBA
 cellular_componentGO:0032040 small-subunit processome IBA
 cellular_componentGO:0034455 t-UTP complex IBA
 molecular_functionGO:0005488 binding IEA
 molecular_functionGO:0030515 snoRNA binding IBA


Pathways (from Reactome)
Pathway description
Major pathway of rRNA processing in the nucleolus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr