ENSMUSG00000052102


Mus musculus

Features
Gene ID: ENSMUSG00000052102
  
Biological name :Gnpda1
  
Synonyms : glucosamine-6-phosphate deaminase 1 / Gnpda1 / O88958
  
Possible biological names infered from orthology : P46926
  
Species: Mus musculus
  
Chr. number: 18
Strand: -1
Band: B3
Gene start: 38327558
Gene end: 38339003
  
Corresponding Affymetrix probe sets: 10458547 (MoGene1.0st)   10535898 (MoGene1.0st)   1448163_at (Mouse Genome 430 2.0 Array)   1455065_x_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000115359
Ensembl peptide - ENSMUSP00000069081
NCBI entrez gene - 26384     See in Manteia.
MGI - MGI:1347054
RefSeq - NM_011937
RefSeq Peptide - NP_036067
swissprot - D3Z0R5
swissprot - O88958
Ensembl - ENSMUSG00000052102
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 gnpda1ENSDARG00000037307Danio rerio
 GNPDA1ENSGALG00000040594Gallus gallus
 GNPDA1ENSG00000113552Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Gnpda2 / Q9CRC9 / glucosamine-6-phosphate deaminase 2 / Q8TDQ7*ENSMUSG0000002920982


Protein motifs (from Interpro)
Interpro ID Name
 IPR004547  Glucosamine-6-phosphate isomerase
 IPR006148  Glucosamine/galactosamine-6-phosphate isomerase
 IPR018321  Glucosamine-6-phosphate isomerase, conserved site
 IPR037171  NagB/RpiA transferase-like


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0005975 carbohydrate metabolic process IEA
 biological_processGO:0006002 fructose 6-phosphate metabolic process ISO
 biological_processGO:0006041 glucosamine metabolic process ISO
 biological_processGO:0006043 glucosamine catabolic process IEA
 biological_processGO:0006044 N-acetylglucosamine metabolic process IEA
 biological_processGO:0006091 generation of precursor metabolites and energy IEA
 biological_processGO:0007340 acrosome reaction TAS
 biological_processGO:0046370 fructose biosynthetic process ISO
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0004342 glucosamine-6-phosphate deaminase activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA


Pathways (from Reactome)
Pathway description
Glycolysis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0001102 small superior vagus ganglion "reduced size of the upper ganglion of the vagus nerve located at the jugular foramen" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:18984]
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Allelic Composition: Fzd4tm1.1(KOMP)Vlcg/Fzd4tm1.1(KOMP)Vlcg
Genetic Background: C57BL/6N-Fzd4tm1.1(KOMP)Vlcg/Ucd

 MP:0001697 abnormal embryo size "anomalous proportions of embryo compared to littermates" [cwg:Carroll W. Goldsmith, Mouse Genome Informatics Curator]
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Allelic Composition: Fzd4tm1.1(KOMP)Vlcg/Fzd4tm1.1(KOMP)Vlcg
Genetic Background: C57BL/6N-Fzd4tm1.1(KOMP)Vlcg/Ucd

 MP:0002989 small kidney "reduced physical bulk one or both of the organs responsible for urine secretion" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
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Allelic Composition: Fzd4tm1.1(KOMP)Vlcg/Fzd4tm1.1(KOMP)Vlcg
Genetic Background: C57BL/6N-Fzd4tm1.1(KOMP)Vlcg/Ucd

 MP:0011100 complete preweaning lethality "death of all organisms of a given genotype in a population between fertilization and weaning age (Mus: approximately 3-4 weeks of age)" [MGI:csmith]
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Allelic Composition: Gnao1tm1b(EUCOMM)Hmgu/Gnao1+
Genetic Background: C57BL/6N-Gnao1tm1b(EUCOMM)Hmgu/H

 MP:0013292 embryonic lethality prior to organogenesis "death prior to the completion of embryo turning (Mus: E9-9.5)" [MGI:smb]
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Allelic Composition: Gnao1tm1b(EUCOMM)Hmgu/Gnao1+
Genetic Background: C57BL/6N-Gnao1tm1b(EUCOMM)Hmgu/H

 MP:0013293 embryonic lethality prior to tooth bud stage "death prior to the appearance of tooth buds (Mus: E12-E12.5)" [MGI:smb]
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Allelic Composition: Gnao1tm1b(EUCOMM)Hmgu/Gnao1+
Genetic Background: C57BL/6N-Gnao1tm1b(EUCOMM)Hmgu/H

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSMUSG00000052102 Gnpda1 / O88958 / glucosamine-6-phosphate deaminase 1 / P46926*  / complex






 

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