ENSMUSG00000058028


Mus musculus

Features
Gene ID: ENSMUSG00000058028
  
Biological name :Zscan5b
  
Synonyms : zinc finger and SCAN domain containing 5B / Zscan5b
  
Possible biological names infered from orthology : A6NGD5 / A6NJL1 / Q9BUG6 / zinc finger and SCAN domain containing 5A / zinc finger and SCAN domain containing 5C / ZSCAN5A / ZSCAN5C
  
Species: Mus musculus
  
Chr. number: 7
Strand: 1
Band: A1
Gene start: 6222278
Gene end: 6239423
  
Corresponding Affymetrix probe sets: 10549827 (MoGene1.0st)   1449543_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000072449
Ensembl peptide - ENSMUSP00000126044
Ensembl peptide - ENSMUSP00000118508
NCBI entrez gene - 170734     See in Manteia.
MGI - MGI:2159640
RefSeq - NM_133204
RefSeq - XM_006539573
RefSeq Peptide - NP_573467
swissprot - D3Z0V0
swissprot - B2RTN3
Ensembl - ENSMUSG00000058028
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 A6NGD5ENSG00000204532Homo sapiens
 A6NJL1ENSG00000197213Homo sapiens
 Q9BUG6ENSG00000131848Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR003309  SCAN domain
 IPR008916  Retrovirus capsid, C-terminal
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013087  Zinc finger C2H2-type
 IPR036236  Zinc finger C2H2 superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr