ENSMUSG00000063253


Mus musculus

Features
Gene ID: ENSMUSG00000063253
  
Biological name :Scoc
  
Synonyms : Q78YZ6 / Scoc / Short coiled-coil protein
  
Possible biological names infered from orthology : Q9UIL1
  
Species: Mus musculus
  
Chr. number: 8
Strand: -1
Band: C2
Gene start: 83430084
Gene end: 83458391
  
Corresponding Affymetrix probe sets: 10450904 (MoGene1.0st)   10579987 (MoGene1.0st)   1416267_at (Mouse Genome 430 2.0 Array)   1430999_a_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000148753
Ensembl peptide - ENSMUSP00000148647
Ensembl peptide - ENSMUSP00000148829
Ensembl peptide - ENSMUSP00000080221
Ensembl peptide - ENSMUSP00000128210
Ensembl peptide - ENSMUSP00000148577
NCBI entrez gene - 56367     See in Manteia.
MGI - MGI:1927654
RefSeq - XM_011248448
RefSeq - NM_001039137
RefSeq - NM_001285992
RefSeq - NM_019708
RefSeq - XM_006531204
RefSeq - XM_006531205
RefSeq Peptide - NP_001272921
RefSeq Peptide - NP_062682
RefSeq Peptide - NP_001034226
swissprot - A0A1D5RML7
swissprot - Q78YZ6
swissprot - A0A1D5RMF2
Ensembl - ENSMUSG00000063253
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 scocaENSDARG00000087333Danio rerio
 scocbENSDARG00000002217Danio rerio
 SCOCENSGALG00000009813Gallus gallus
 SCOCENSG00000153130Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR019357  Short coiled-coil protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016239 positive regulation of macroautophagy ISS
 biological_processGO:0061635 regulation of protein complex stability ISS
 cellular_componentGO:0000139 Golgi membrane IEA
 cellular_componentGO:0005654 nucleoplasm ISO
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005768 endosome ISO
 cellular_componentGO:0005794 Golgi apparatus ISO
 cellular_componentGO:0005802 trans-Golgi network ISO
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0016020 membrane IEA
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
Retrograde transport at the Trans-Golgi-Network


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSMUSG00000060904 Arl1 / P61211 / ADP-ribosylation factor-like protein 1 / P40616* / ADP ribosylation factor like GTPase 1*  / complex / reaction






 

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