ENSMUSG00000072258


Mus musculus

Features
Gene ID: ENSMUSG00000072258
  
Biological name :Taf1a
  
Synonyms : Taf1a / TATA box-binding protein-associated factor RNA polymerase I subunit A isoform 1
  
Possible biological names infered from orthology : Q15573 / TATA-box binding protein associated factor, RNA polymerase I subunit A
  
Species: Mus musculus
  
Chr. number: 1
Strand: 1
Band: H5
Gene start: 183388981
Gene end: 183410198
  
Corresponding Affymetrix probe sets: 10598107 (MoGene1.0st)   1419702_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000142213
Ensembl peptide - ENSMUSP00000094808
Ensembl peptide - ENSMUSP00000141334
NCBI entrez gene - 21339     See in Manteia.
MGI - MGI:109578
RefSeq - NM_001277957
RefSeq - NM_001277958
RefSeq - NM_001277959
RefSeq - NM_021466
RefSeq Peptide - NP_001264887
RefSeq Peptide - NP_001264888
RefSeq Peptide - NP_067441
RefSeq Peptide - NP_001264886
swissprot - J3KMG9
swissprot - A0A0A6YXZ8
swissprot - A0A0A6YW00
Ensembl - ENSMUSG00000072258
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 taf1aENSDARG00000052471Danio rerio
 TAF1AENSGALG00000009441Gallus gallus
 TAF1AENSG00000143498Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR016629  RNA polymerase I, subunit A (TATA-binding protein-associated factor)


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006360 transcription by RNA polymerase I IEA
 cellular_componentGO:0000120 RNA polymerase I transcription factor complex IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0015630 microtubule cytoskeleton IEA
 molecular_functionGO:0005515 protein binding IEA


Pathways (from Reactome)
Pathway description
B-WICH complex positively regulates rRNA expression
RNA Polymerase I Transcription Initiation
RNA Polymerase I Promoter Escape
RNA Polymerase I Chain Elongation
RNA Polymerase I Transcription Termination


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr