ENSMUSG00000075602


Mus musculus

Features
Gene ID: ENSMUSG00000075602
  
Biological name :Ly6a
  
Synonyms : Ly6a / Lymphocyte antigen 6A-2/6E-1 / P05533
  
Possible biological names infered from orthology :
  
Species: Mus musculus
  
Chr. number: 15
Strand: -1
Band: D3
Gene start: 74994877
Gene end: 74998031
  
Corresponding Affymetrix probe sets: 10429564 (MoGene1.0st)   1417185_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000140998
Ensembl peptide - ENSMUSP00000140287
Ensembl peptide - ENSMUSP00000140638
Ensembl peptide - ENSMUSP00000023248
Ensembl peptide - ENSMUSP00000139488
Ensembl peptide - ENSMUSP00000140099
NCBI entrez gene - 110454     See in Manteia.
MGI - MGI:107527
RefSeq - NM_001271418
RefSeq - NM_001271416
RefSeq - NM_001271417
RefSeq - NM_001271419
RefSeq - NM_001271446
RefSeq - NM_010738
RefSeq Peptide - NP_034868
RefSeq Peptide - NP_001258345
RefSeq Peptide - NP_001258346
RefSeq Peptide - NP_001258347
RefSeq Peptide - NP_001258348
RefSeq Peptide - NP_001258375
swissprot - P05533
swissprot - A0A087WNT7
Ensembl - ENSMUSG00000075602
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Ly6i / Q9WU67 / Lymphocyte antigen 6I ENSMUSG0000002258672
Ly6g / P35461 / Lymphocyte antigen 6G ENSMUSG0000002258271
Ly6f / P35460 / Lymphocyte antigen 6F ENSMUSG0000002258369
Ly6c2 / P0CW03 / Mus musculus lymphocyte antigen 6 complex, locus C2 (Ly6c2), transcript variant 1, mRNA.ENSMUSG0000002258465
BC025446 / cDNA sequence BC025446ENSMUSG0000004772863
Ly6c1 / P0CW02 / Lymphocyte antigen 6C1 ENSMUSG0000007901854


Protein motifs (from Interpro)
Interpro ID Name
 IPR016054  Ly-6 antigen/uPA receptor-like
 IPR018363  CD59 antigen, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005622 intracellular IDA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0009897 external side of plasma membrane IDA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0031225 anchored component of membrane IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0000066 osteoporosis "reduction in bone mass or atrophy of skeletal tissue; may lead to skeletal fragility" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, MGI:CLS, J:57315]
Show

Allelic Composition: KitW-v/KitW-v,Ly6atm1Pmf/Ly6atm1Pmf
Genetic Background: involves: 129P2/OlaHsd * C57BL/6

 MP:0000218 increased WBC count "greater than normal WBC numbers" [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator, MeSH:National Library of Medicine - Medical Subject Headings , 2003]
Show

Allelic Composition: Zic4tm2Kjmi/Zic4+
Genetic Background: involves: 129P2/OlaHsd * C57BL/6J

 MP:0000219 increased neutrophil count "greater than normal neutrophil numbers" [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator]
Show

Allelic Composition: Zic4tm2Kjmi/Zic4+
Genetic Background: involves: 129P2/OlaHsd * C57BL/6J

 MP:0000223 decreased monocyte count "fewer than normal monocyte numbers" [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator]
Show

Allelic Composition: Pde6brd1/Pde6brd1,Pde6gtm1Goff/Pde6gtm1Goff
Genetic Background: either: (involves: 129S/SvEv * C57BL/6 * MF1 * Swiss Webster) or (involves: 129S1/Sv * 129X1/SvJ * C57BL/6 * MF1 * Swiss Webster)

 MP:0000239 deficiency of myeloid colony forming progenitor cells "lack of precursors of the myeloid cell types" [J:60630, tc:Teresa Chu , Mouse Genome Informatics Curator]
Show

Allelic Composition: Zic4tm2Kjmi/Zic4+
Genetic Background: involves: 129P2/OlaHsd * C57BL/6J

 MP:0000240 extramedullary hematopoiesis "formation and development of blood cells outside the bone marrow, e.g., in the spleen, liver, or lymph nodes" [MeSH:National Library of Medicine - Medical Subject Headings , 2003]
Show

Allelic Composition: Zic4tm2Kjmi/Zic4+
Genetic Background: involves: 129P2/OlaHsd * C57BL/6J

 MP:0000334 decreased granulocyte number "fewer than expected number of leukocytes that have abundant granules in the cytoplasm: basophils, neutrophils, or eosinophils" [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator]
Show

Allelic Composition: Pde6brd1/Pde6brd1,Pde6gtm1Goff/Pde6gtm1Goff
Genetic Background: either: (involves: 129S/SvEv * C57BL/6 * MF1 * Swiss Webster) or (involves: 129S1/Sv * 129X1/SvJ * C57BL/6 * MF1 * Swiss Webster)

 MP:0000691 enlarged spleen "increased spleen size" [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator]
Show

Allelic Composition: Zic4tm2Kjmi/Zic4+
Genetic Background: involves: 129P2/OlaHsd * C57BL/6J

 MP:0001209 spontaneous skin ulceration "unpredictable appearance of skin lesions, usually with inflammation" [J:65302]
Show

Allelic Composition: Zic4tm2Kjmi/Zic4+
Genetic Background: involves: 129P2/OlaHsd * C57BL/6J

 MP:0001222 epidermal hyperplasia "increase in size of the epidermis due to increase in epidermal cell number" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:65146]
Show

Allelic Composition: Zic4tm2Kjmi/Zic4+
Genetic Background: involves: 129P2/OlaHsd * C57BL/6J

 MP:0001242 hyperkeratosis "increased depth of the corneal layer of the epidermis; thickening of the horny layer of the epidermis" [J:1133]
Show

Allelic Composition: Zic4tm2Kjmi/Zic4+
Genetic Background: involves: 129P2/OlaHsd * C57BL/6J

 MP:0001577 anemia "less than normal levels of red blood cells, hemoglobin or volume of packed red blood cells " [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:53370]
Show

Allelic Composition: KitW-v/KitW-v,Ly6atm1Pmf/Ly6atm1Pmf
Genetic Background: involves: 129P2/OlaHsd * C57BL/6

 MP:0002123 abnormal hematopoiesis "abnormal development of the enucleated fetal and adult erythrocytes that develop in the aorta, genital ridge and mesonephros region and later in the fetal and adult liver" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
Show

Allelic Composition: Pde6brd1/Pde6brd1,Pde6gtm1Goff/Pde6gtm1Goff
Genetic Background: either: (involves: 129S/SvEv * C57BL/6 * MF1 * Swiss Webster) or (involves: 129S1/Sv * 129X1/SvJ * C57BL/6 * MF1 * Swiss Webster)

 MP:0002169 no phenotype detected "normal, viable and fertile appearance and behavior; indistinguishable from controls" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
Show

Allelic Composition: Pax3Sp-d/Pax3+
Genetic Background: C57BL/6J-Pax3Sp-d

Allelic Composition: Ly6atm1Grau/Ly6atm1Grau
Genetic Background: involves: 129X1/SvJ * C57BL/6

 MP:0002490 abnormal circulating immunoglobulin concentration "deviation from the normal levels of glycoproteins present in the blood and other tissue, often functioning as antibodies" [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator, Stedman s Medical Dictionary:ISBN 0-683-40008-8]
Show

Allelic Composition: Pde6brd1/Pde6brd1,Pde6gtm1Goff/Pde6gtm1Goff
Genetic Background: either: (involves: 129S/SvEv * C57BL/6 * MF1 * Swiss Webster) or (involves: 129S1/Sv * 129X1/SvJ * C57BL/6 * MF1 * Swiss Webster)

 MP:0003135 increased erythrocyte precursors "greater numbers of progenitors of the erythrocyte lineage" [smb:Susan M. Bello, Mouse Genome Informatics Curator]
Show

Allelic Composition: Zic4tm2Kjmi/Zic4+
Genetic Background: involves: 129P2/OlaHsd * C57BL/6J

 MP:0003179 decreased platelet count "fewer than the normal numbers of the non-nucleated cells found in the blood and involved in blood coagulation " [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator, hdene:Howard Dene , Mouse Genome Informatics Curator, J:93052]
Show

Allelic Composition: Pde6brd1/Pde6brd1,Pde6gtm1Goff/Pde6gtm1Goff
Genetic Background: either: (involves: 129S/SvEv * C57BL/6 * MF1 * Swiss Webster) or (involves: 129S1/Sv * 129X1/SvJ * C57BL/6 * MF1 * Swiss Webster)

 MP:0004207 squamous cell carcinoma "a carcinoma that arises from stratified squamous epithelium that occurs in sites where glandular or columnar epithelium is normally present, such as the skin, esophagus, lungs and cervix" [MGI:rbabiuk "Randall Babiuk, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Zic4tm2Kjmi/Zic4+
Genetic Background: involves: 129P2/OlaHsd * C57BL/6J

 MP:0004985 decreased osteoclast cell number "reduced number of the bone resorpting cells that remove bone tissue by degrading the mineralized matrix" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: KitW-v/KitW-v,Ly6atm1Pmf/Ly6atm1Pmf
Genetic Background: involves: 129P2/OlaHsd * C57BL/6

 MP:0004991 decreased bone strength "reduced ability of bone to endure the application of force without yielding or breaking" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: KitW-v/KitW-v,Ly6atm1Pmf/Ly6atm1Pmf
Genetic Background: involves: 129P2/OlaHsd * C57BL/6

 MP:0005006 abnormal osteoblast function "anomalous function of this bone-forming cell, which normally forms an osseous matrix in which it becomes enclosed as an osteocyte " [Stedman s Medical Dictionary:ISBN 0-683-40008-8]
Show

Allelic Composition: KitW-v/KitW-v,Ly6atm1Pmf/Ly6atm1Pmf
Genetic Background: involves: 129P2/OlaHsd * C57BL/6

 MP:0005013 increased lymphocyte number "greater than normal white blood cell numbers" [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator]
Show

Allelic Composition: Pde6brd1/Pde6brd1,Pde6gtm1Goff/Pde6gtm1Goff
Genetic Background: either: (involves: 129S/SvEv * C57BL/6 * MF1 * Swiss Webster) or (involves: 129S1/Sv * 129X1/SvJ * C57BL/6 * MF1 * Swiss Webster)

 MP:0005094 abnormal T cell proliferation "anomaly in the clonal expansion of naive T cells" [Immunobiology , The Immune System in Health and Disease:ISBN 0-8153-1691-7]
Show

Allelic Composition: Pde6brd1/Pde6brd1,Pde6gtm1Goff/Pde6gtm1Goff
Genetic Background: either: (involves: 129S/SvEv * C57BL/6 * MF1 * Swiss Webster) or (involves: 129S1/Sv * 129X1/SvJ * C57BL/6 * MF1 * Swiss Webster)

 MP:0005097 polychromatophilia "condition characterized by the presence of red blood cells that have an affinity for acid, basic, and neutral stains" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:305]
Show

Allelic Composition: Zic4tm2Kjmi/Zic4+
Genetic Background: involves: 129P2/OlaHsd * C57BL/6J

 MP:0005606 increased bleeding time "greater than the normal duration of blood flow after skin puncture; indicative of platelet and capillary function" [MeSH:National Library of Medicine - Medical Subject Headings , 2003, RGD:Rat Genome Database submission]
Show

Allelic Composition: Pde6brd1/Pde6brd1,Pde6gtm1Goff/Pde6gtm1Goff
Genetic Background: either: (involves: 129S/SvEv * C57BL/6 * MF1 * Swiss Webster) or (involves: 129S1/Sv * 129X1/SvJ * C57BL/6 * MF1 * Swiss Webster)

 MP:0006410 abnormal common myeloid progenitor cell morphology "anomaly in the structure of the hematopoietic stem cells that are capable of forming any of the myeloid lineage cells (erythrocytes, granulocytes, thrombocytes, monocytes, and mast cells) but not cells of the lymphoid lineage" [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Pde6brd1/Pde6brd1,Pde6gtm1Goff/Pde6gtm1Goff
Genetic Background: either: (involves: 129S/SvEv * C57BL/6 * MF1 * Swiss Webster) or (involves: 129S1/Sv * 129X1/SvJ * C57BL/6 * MF1 * Swiss Webster)

Allelic Composition: KitW-v/KitW-v,Ly6atm1Pmf/Ly6atm1Pmf
Genetic Background: involves: 129P2/OlaHsd * C57BL/6

Allelic Composition: Ly6atm1Pmf/Ly6atm1Pmf
Genetic Background: C.129P2-Ly6atm1Pmf

 MP:0008250 abnormal myeloid leukocyte morphology "any structural anomaly of a cell of the monocyte, granulocyte, or mast cell lineage" [CL:0000766]
Show

Allelic Composition: Pde6brd1/Pde6brd1,Pde6gtm1Goff/Pde6gtm1Goff
Genetic Background: either: (involves: 129S/SvEv * C57BL/6 * MF1 * Swiss Webster) or (involves: 129S1/Sv * 129X1/SvJ * C57BL/6 * MF1 * Swiss Webster)

 MP:0008255 decreased megakaryocyte cell number "reduced number of giant cells 50 to 100 micron in diameter, with a greatly lobulated nucleus, found in the bone marrow; mature blood platelets are released from its cytoplasm" [CL:0000556, ISBN:0721601464]
Show

Allelic Composition: Pde6brd1/Pde6brd1,Pde6gtm1Goff/Pde6gtm1Goff
Genetic Background: either: (involves: 129S/SvEv * C57BL/6 * MF1 * Swiss Webster) or (involves: 129S1/Sv * 129X1/SvJ * C57BL/6 * MF1 * Swiss Webster)

 MP:0008395 abnormal osteoblast differentiation "atypical production of or inability to produce bone-forming cells, which normally form an osseous matrix (osteoid) in which they become enclosed as an osteocytes" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Ly6atm1Pmf/Ly6atm1Pmf
Genetic Background: C.129P2-Ly6atm1Pmf

 MP:0008396 abnormal osteoclast differentiation "atypical production of or inability to produce bone resorpting cells that remove bone tissue by degrading the mineralized matrix" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Ly6atm1Pmf/Ly6atm1Pmf
Genetic Background: C.129P2-Ly6atm1Pmf

 MP:0008470 abnormal spleen B cell follicle morphology "any structural anomaly of the area of the white pulp where the affinity maturation of B cells and the generation of memory B cells and plasma cells occur" [PMID:17495967]
Show

Allelic Composition: Zic4tm2Kjmi/Zic4+
Genetic Background: involves: 129P2/OlaHsd * C57BL/6J

 MP:0009115 abnormal fat cell morphology "any structural anomaly of a fat-storing cell found mostly in the abdominal cavity and subcutaneous tissue of mammals" [CL:0000449]
Show

Allelic Composition: Ly6atm1Pmf/Ly6atm1Pmf
Genetic Background: C.129P2-Ly6atm1Pmf

 MP:0010124 decreased bone mineral content "reduction in the amount (usually in grams/cm) of bone mineral divided by a bone-scanned area" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Ly6atm1Pmf/Ly6atm1Pmf
Genetic Background: C.129P2-Ly6atm1Pmf

 MP:0010373 myeloid hyperplasia "greater than normal number of nucleated cells of the myeloid lineage (a monocyte, granulocyte, or mast cell), found in blood or other tissue" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Zic4tm2Kjmi/Zic4+
Genetic Background: involves: 129P2/OlaHsd * C57BL/6J

 MP:0010869 decreased bone trabecula number "decreased number of intersecting plates and spicules in cancellous bone which form a meshwork of intercommunicating spaces filled with blood vessels and marrow; in mature bone, the trabeculae are aligned in parallel with the lines of major compressive or tensile force" [http://www.dorlands.com/ "Dorland s Illustrated Medical Dictionary, 31st edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Ly6atm1Pmf/Ly6atm1Pmf
Genetic Background: C.129P2-Ly6atm1Pmf

 MP:0010927 decreased osteoid volume "reduction in the amount of space occupied by newly formed organic bone matrix secreted by osteoblasts" [ISBN:0-683-40008-8 "Stedman s Medical Dictionary, 27th edition"]
Show

Allelic Composition: Ly6atm1Pmf/Ly6atm1Pmf
Genetic Background: C.129P2-Ly6atm1Pmf

 MP:0011091 complete prenatal lethality "death of all organisms of a given genotype in a population between fertilization and birth (Mus: approximately E18.5)" [MGI:csmith]
Show

Allelic Composition: Pde6brd1/Pde6brd1,Pde6gtm1Goff/Pde6gtm1Goff
Genetic Background: either: (involves: 129S/SvEv * C57BL/6 * MF1 * Swiss Webster) or (involves: 129S1/Sv * 129X1/SvJ * C57BL/6 * MF1 * Swiss Webster)

 MP:0011102 partial embryonic lethality "the appearance of lower than Mendelian ratios of organisms of a given genotype due to death of some, but not all of the organisms within the embryonic period prior to organogenesis (Mus: prior to E14)" [MGI:csmith]
Show

Allelic Composition: KitW-v/KitW-v,Ly6atm1Pmf/Ly6atm1Pmf
Genetic Background: involves: 129P2/OlaHsd * C57BL/6

 MP:0020040 decreased bone ossification "decrease in the formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance" [ORCID: orcid.org/0000-0003-4606-0597]
Show

Allelic Composition: Ly6atm1Pmf/Ly6atm1Pmf
Genetic Background: C.129P2-Ly6atm1Pmf

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
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