ENSDARG00000000542


Danio rerio

Features
Gene ID: ENSDARG00000000542
  
Biological name :gtf2e1
  
Synonyms : general transcription factor IIE, polypeptide 1, alpha / gtf2e1
  
Possible biological names infered from orthology : general transcription factor IIE subunit 1 / Mus musculusral transcription factor II E, polypeptide 1 (alpha subunit) (Gtf2e1), transcript variant 2, mRNA. / P29083 / Q9D0D5
  
Species: Danio rerio
  
Chr. number: 9
Strand: -1
Band:
Gene start: 27688274
Gene end: 27720612
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000119282
Ensembl peptide - ENSDARP00000135822
Ensembl peptide - ENSDARP00000001151
Ensembl peptide - ENSDARP00000113390
Ensembl peptide - ENSDARP00000118122
NCBI entrez gene - 567899     See in Manteia.
RefSeq - NM_001045145
RefSeq Peptide - NP_001038610
swissprot - B0UYP3
swissprot - F1QBP7
swissprot - Q5SQE1
ZFIN ID - ZDB-GENE-041210-221
Ensembl - ENSDARG00000000542
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 GTF2E1ENSGALG00000042320Gallus gallus
 GTF2E1ENSG00000153767Homo sapiens
 Gtf2e1ENSMUSG00000022828Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002853  Transcription initiation factor IIE subunit alpha, N-terminal
 IPR011991  ArsR-like helix-turn-helix domain
 IPR013137  Zinc finger, TFIIB-type
 IPR017919  Transcription factor TFE/TFIIEalpha HTH domain
 IPR021600  Transcription factor TFIIE alpha subunit, C-terminal
 IPR024550  TFIIEalpha/SarR/Rpc3 HTH domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006367 transcription initiation from RNA polymerase II promoter IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
RNA Polymerase II Pre-transcription Events
RNA polymerase II transcribes snRNA genes
RNA Polymerase II Promoter Escape
RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
RNA Polymerase II Transcription Initiation
RNA Polymerase II Transcription Initiation And Promoter Clearance


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000006816 gtf2f2b / general transcription factor IIF, polypeptide 2b / GTF2F2* / P13984* / Q8R0A0* / ral transcription factor IIF subunit 2 * / general transcription factor IIF subunit 2*  / complex / reaction
 ENSDARG00000012672 gtf2e2 / general transcription factor IIE, polypeptide 2, beta / P29084* / Q9D902* / ral transcription factor IIE subunit 2 * / general transcription factor IIE subunit 2*  / complex
 ENSDARG00000053685 gtf2a2 / general transcription factor IIA, 2 / P52657* / Q80ZM7* / general transcription factor IIA subunit 2* / Transcription initiation factor IIA subunit 2 *  / complex / reaction
 ENSDARG00000069910 gtf2f2a / general transcription factor IIF, polypeptide 2a / GTF2F2* / P13984* / Q8R0A0* / ral transcription factor IIF subunit 2 * / general transcription factor IIF subunit 2*  / complex / reaction






 

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