ENSGALG00000042320


Gallus gallus

Features
Gene ID: ENSGALG00000042320
  
Biological name :GTF2E1
  
Synonyms : general transcription factor IIE subunit 1 / GTF2E1
  
Possible biological names infered from orthology : Mus musculusral transcription factor II E, polypeptide 1 (alpha subunit) (Gtf2e1), transcript variant 2, mRNA. / P29083 / Q9D0D5
  
Species: Gallus gallus
  
Chr. number: 1
Strand: -1
Band:
Gene start: 79717852
Gene end: 79762511
  
Corresponding Affymetrix probe sets: Gga.17184.1.S1_at (Chicken Array)   GgaAffx.9499.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000044687
NCBI entrez gene - 418328     See in Manteia.
RefSeq - XM_015295015
RefSeq - XM_416551
swissprot - A0A1D5NWE8
Ensembl - ENSGALG00000042320
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 gtf2e1ENSDARG00000000542Danio rerio
 GTF2E1ENSG00000153767Homo sapiens
 Gtf2e1ENSMUSG00000022828Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ENSGALG0000001360049


Protein motifs (from Interpro)
Interpro ID Name
 IPR002853  Transcription initiation factor IIE subunit alpha, N-terminal
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013137  Zinc finger, TFIIB-type
 IPR017919  Transcription factor TFE/TFIIEalpha HTH domain
 IPR021600  Transcription factor TFIIE alpha subunit, C-terminal
 IPR024550  TFIIEalpha/SarR/Rpc3 HTH domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006367 transcription initiation from RNA polymerase II promoter IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005669 transcription factor TFIID complex IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0097550 transcriptional preinitiation complex IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
RNA Polymerase II Pre-transcription Events
RNA polymerase II transcribes snRNA genes
RNA Polymerase II Promoter Escape
RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
RNA Polymerase II Transcription Initiation
RNA Polymerase II Transcription Initiation And Promoter Clearance


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000003793 GTF2A2 / general transcription factor IIA subunit 2 / P52657* / Q80ZM7* / Transcription initiation factor IIA subunit 2 *  / complex / reaction
 ENSGALG00000006205 GTF2B / general transcription factor IIB / P62915* / Q00403* / Transcription initiation factor IIB *  / complex / reaction
 ENSGALG00000016974 GTF2F2 / general transcription factor IIF subunit 2 / P13984* / Q8R0A0* / ral transcription factor IIF subunit 2 *  / complex / reaction
 ENSGALG00000010576 GTF2A1 / general transcription factor IIA subunit 1 / P52655* / Q99PM3* / Transcription initiation factor IIA subunit 1 Transcription initiation factor IIA alpha chain Transcription initiat...  / complex / reaction






 

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