ENSDARG00000002970


Danio rerio

Features
Gene ID: ENSDARG00000002970
  
Biological name :ss18
  
Synonyms : ss18 / synovial sarcoma translocation, chromosome 18 (H. sapiens)
  
Possible biological names infered from orthology : Q15532 / Q62280 / SS18, nBAF chromatin remodeling complex subunit
  
Species: Danio rerio
  
Chr. number: 2
Strand: -1
Band:
Gene start: 1348281
Gene end: 1364678
  
Corresponding Affymetrix probe sets: Dr.20155.1.S1_at (Zebrafish Array)   NM_199744_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000136492
Ensembl peptide - ENSDARP00000005954
NCBI entrez gene - 326668     See in Manteia.
RefSeq - NM_199744
RefSeq - NM_001291325
RefSeq Peptide - NP_001278254
RefSeq Peptide - NP_956038
swissprot - A0A0R4IPF8
swissprot - Q802V1
ZFIN ID - ZDB-GENE-030131-4867
Ensembl - ENSDARG00000002970
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SS18ENSGALG00000015119Gallus gallus
 SS18ENSG00000141380Homo sapiens
 Ss18ENSMUSG00000037013Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ss18l2 / synovial sarcoma translocation gene on chromosome 18-like 2 / Q9UHA2* / Q9D174* / SS18 like 2* / SS18, nBAF chromatin remodeling complex subunit like 2*ENSDARG0000010108511


Protein motifs (from Interpro)
Interpro ID Name
 IPR007726  SS18 family


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:1903506 regulation of nucleic acid-templated transcription IEA
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0003713 transcription coactivator activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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