ENSDARG00000004174
Danio rerio | |
Features
| Gene ID: | ENSDARG00000004174 | | | | | Biological name : | cnot1 | | | | | Synonyms : | CCR4-NOT transcription complex, subunit 1 / cnot1 | | | | | Possible biological names infered from orthology : | A5YKK6 / Q6ZQ08 | | | | | Species: | Danio rerio | | | | | Chr. number: | 25 | | Strand: | 1 | | Band: | | | Gene start: | 17313568 | | Gene end: | 17346929 | | | | | Corresponding Affymetrix probe sets: | Dr.11659.1.A1_at (Zebrafish Array) Dr.11659.1.A1_s_at (Zebrafish Array) NM_001079951_at (Zebrafish Genome Array with custom cdf files) | | | | | Cross references: | Ensembl peptide - ENSDARP00000116639
Ensembl peptide - ENSDARP00000111504
NCBI entrez gene - 448949
See in Manteia.
RefSeq - NM_001079951
RefSeq Peptide - NP_001073420
swissprot - F1R160
swissprot - F1QFA6
ZFIN ID - ZDB-GENE-040915-1
Ensembl - ENSDARG00000004174
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See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed
Ortholog prediction (from Ensembl)
Paralog prediction (from Ensembl)
No match
Protein motifs (from Interpro)
| IPR007196 | CCR4-Not complex component, Not1, C-terminal | | IPR024557 | CCR4-Not complex, Not1 subunit, domain of unknown function DUF3819 | | IPR032191 | CCR4-NOT transcription complex subunit 1, CAF1-binding domain | | IPR032193 | CCR4-NOT transcription complex subunit 1, TTP binding domain | | IPR032194 | CCR4-NOT transcription complex subunit 1, HEAT repeat |
Gene Ontology (GO)
No match
Pathways (from Reactome)
Phenotype (from MGI, Zfin or HPO)
| ZFA:0000051 | otic vesicle | otic vesicle decreased size , abnormal
otic vesicle malformed , abnormal |
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| | ZFA:0000054 | pericardium | pericardium edematous , abnormal |
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| | ZFA:0000107 | eye | eye decreased size , abnormal |
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| | ZFA:0000112 | gut | gut quality , abnormal
gut hypoplastic , abnormal
gut decreased size , abnormal |
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| | ZFA:0000114 | heart | heart quality , abnormal |
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| | ZFA:0000123 | liver | liver quality , abnormal
liver hypoplastic , abnormal
liver decreased size , abnormal |
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| | ZFA:0001094 | whole organism | whole organism decreased size , abnormal
whole organism anatomical axis decreased size , abnormal |
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| | ZFA:0001114 | head | head decreased size , abnormal
head edematous , abnormal |
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| | ZFA:0001115 | trunk | trunk curved ventral , abnormal |
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| | ZFA:0001439 | anatomical system | anatomical system quality , abnormal |
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Interacting proteins (from Reactome)
No match
0 s.
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