ENSDARG00000005034


Danio rerio

Features
Gene ID: ENSDARG00000005034
  
Biological name :ispd
  
Synonyms : A0JPF9 / isoprenoid synthase domain containing / ispd
  
Possible biological names infered from orthology : A4D126 / D-ribitol-5-phosphate cytidylyltransferase / Q5RJG7
  
Species: Danio rerio
  
Chr. number: 15
Strand: -1
Band:
Gene start: 34495056
Gene end: 34568705
  
Corresponding Affymetrix probe sets: Dr.15271.1.A1_at (Zebrafish Array)   NM_001077802_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000118574
Ensembl peptide - ENSDARP00000025837
NCBI entrez gene - 798716     See in Manteia.
RefSeq - NM_001077802
RefSeq - XM_005157764
RefSeq Peptide - NP_001071270
swissprot - A0JPF9
ZFIN ID - ZDB-GENE-061110-16
Ensembl - ENSDARG00000005034
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ISPDENSGALG00000010795Gallus gallus
 ISPDENSG00000214960Homo sapiens
 IspdENSMUSG00000043153Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR018294  4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site
 IPR029044  Nucleotide-diphospho-sugar transferases
 IPR034683  Cytidylyltransferase IspD/TarI


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006486 protein glycosylation IEA
 biological_processGO:0008299 isoprenoid biosynthetic process IEA
 biological_processGO:0035269 protein O-linked mannosylation IMP
 biological_processGO:0048747 muscle fiber development IMP
 biological_processGO:0048854 brain morphogenesis IMP
 biological_processGO:0060049 regulation of protein glycosylation IMP
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol ISS
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0016779 nucleotidyltransferase activity IEA
 molecular_functionGO:0042803 protein homodimerization activity ISS
 molecular_functionGO:0047349 D-ribitol-5-phosphate cytidylyltransferase activity ISS
 molecular_functionGO:0070567 cytidylyltransferase activity ISS


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain hydrocephalic , abnormal
Show

 ZFA:0000107 eye eye decreased size , abnormal
Show

 ZFA:0005145 muscle muscle muscle tendon junction disorganized , abnormal
muscle myofibril degenerate , abnormal
muscle sarcolemma collapsed , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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