ENSDARG00000005251


Danio rerio

Features
Gene ID: ENSDARG00000005251
  
Biological name :rpe
  
Synonyms : ribulose-5-phosphate-3-epimerase / rpe
  
Possible biological names infered from orthology : Q2QD12 / Q8VEE0 / Q96AT9 / ribulose-5-phosphate-3-epimerase like 1 / Ribulose-phosphate 3-epimerase / RPEL1
  
Species: Danio rerio
  
Chr. number: 9
Strand: -1
Band:
Gene start: 24025444
Gene end: 24031461
  
Corresponding Affymetrix probe sets: Dr.237.1.A1_at (Zebrafish Array)   Dr.237.2.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000117476
Ensembl peptide - ENSDARP00000023863
NCBI entrez gene - 334897     See in Manteia.
RefSeq - NM_001243424
RefSeq Peptide - NP_001230353
swissprot - B8JI94
swissprot - Q6PBW9
ZFIN ID - ZDB-GENE-030131-6837
Ensembl - ENSDARG00000005251
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000002847Gallus gallus
 RPEENSG00000197713Homo sapiens
 RPEL1ENSG00000235376Homo sapiens
 RpeENSMUSG00000026005Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000056  Ribulose-phosphate 3-epimerase-like
 IPR011060  Ribulose-phosphate binding barrel
 IPR013785  Aldolase-type TIM barrel
 IPR026019  Ribulose-phosphate 3-epimerase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0005975 carbohydrate metabolic process IEA
 biological_processGO:0006098 pentose-phosphate shunt IEA
 biological_processGO:0008152 metabolic process IEA
 biological_processGO:0009052 pentose-phosphate shunt, non-oxidative branch IBA
 biological_processGO:0019323 pentose catabolic process IBA
 biological_processGO:0044262 cellular carbohydrate metabolic process IBA
 biological_processGO:0060271 cilium assembly IMP
 cellular_componentGO:0005829 cytosol IBA
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0004750 ribulose-phosphate 3-epimerase activity IBA
 molecular_functionGO:0016853 isomerase activity IEA
 molecular_functionGO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEA
 molecular_functionGO:0046872 metal ion binding IBA


Pathways (from Reactome)
Pathway description
Pentose phosphate pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain hydrocephalic , abnormal
Show

 ZFA:0000047 peripheral olfactory organ peripheral olfactory organ cilium morphology , abnormal
Show

 ZFA:0000114 heart heart edematous , abnormal
Show

 ZFA:0001117 post-vent region post-vent region curved , abnormal
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 ZFA:0001617 otolith otolith malformed , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000005251 rpe / ribulose-5-phosphate-3-epimerase / RPEL1* / Q96AT9* / Q8VEE0* / Q2QD12* / Ribulose-phosphate 3-epimerase * / ribulose-5-phosphate-3-epimerase like 1*  / complex






 

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