ENSDARG00000006031


Danio rerio
pyridoxalabatphosphate-dependenttransferaseactivity-aminobutyrateaminotransferasedomaintransaminaseeukaryoticclass-iiimajorgamma-aminobutyricacidmetabolicprocesscatalyticphosphatebindingdegradationgaba

Features
Gene ID: ENSDARG00000006031
  
Biological name :abat
  
Synonyms : 4-aminobutyrate aminotransferase / abat
  
Possible biological names infered from orthology : 4-aminobutyrate aminotransferase, mitochondrial / P61922 / P80404
  
Species: Danio rerio
  
Chr. number: 3
Strand: -1
Band:
Gene start: 27832500
Gene end: 27880229
  
Corresponding Affymetrix probe sets: Dr.4615.1.S1_a_at (Zebrafish Array)   Dr.4615.1.S1_x_at (Zebrafish Array)   Dr.4615.2.S1_at (Zebrafish Array)   Dr.5312.1.S1_at (Zebrafish Array)   NM_201498_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000125625
Ensembl peptide - ENSDARP00000148000
NCBI entrez gene - 378968     See in Manteia.
RefSeq - NM_201498
RefSeq Peptide - NP_958906
swissprot - I3IRW7
ZFIN ID - ZDB-GENE-031006-4
Ensembl - ENSDARG00000006031
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ABATENSGALG00000007334Gallus gallus
 ABATENSG00000183044Homo sapiens
 AbatENSMUSG00000057880Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR004631  4-aminobutyrate aminotransferase, eukaryotic
 IPR005814  Aminotransferase class-III
 IPR015421  Pyridoxal phosphate-dependent transferase, major domain
 IPR015422  Pyridoxal phosphate-dependent transferase domain 1
 IPR015424  Pyridoxal phosphate-dependent transferase


Gene Ontology (GO)
nitrogen compound metabolic processcellular metabolic processprimary metabolic processsmall molecule metabolic processregulation of biological qualityorganic substance metabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processsmall molecule metabolic processregulation of biological qualityorganic substance metabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processsmall molecule metabolic processregulation of biological qualityorganic substance metabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processsmall molecule metabolic processregulation of biological qualityorganic substance metabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processsmall molecule metabolic processregulation of biological qualityorganic substance metabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processsmall molecule metabolic processregulation of biological qualityorganic substance metabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processsmall molecule metabolic processregulation of biological qualityorganic substance metabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processsmall molecule metabolic processregulation of biological qualityorganic substance metabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processsmall molecule metabolic processregulation of biological qualityorganic substance metabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processsmall molecule metabolic processregulation of biological qualityorganic substance metabolic processnitrogen compound metabnitrogen compound metabolic processcellular metabolic proccellular metabolic processprimary metabolic proceprimary metabolic processsmall molecule metabolismall molecule metabolic processregulation of biologicaregulation of biological qualityorganic substance metaborganic substance metabolic process
transferase activityion bindingorganic cyclic compound bindingheterocyclic compound bindingcofactor bindingsmall molecule bindingdrug bindingtransferase activityion bindingorganic cyclic compound bindingheterocyclic compound bindingcofactor bindingsmall molecule bindingdrug bindingtransferase activityion bindingorganic cyclic compound bindingheterocyclic compound bindingcofactor bindingsmall molecule bindingdrug bindingtransferase activityion bindingorganic cyclic compound bindingheterocyclic compound bindingcofactor bindingsmall molecule bindingdrug bindingtransferase activityion bindingorganic cyclic compound bindingheterocyclic compound bindingcofactor bindingsmall molecule bindingdrug bindingtransferase activityion bindingorganic cyclic compound bindingheterocyclic compound bindingcofactor bindingsmall molecule bindingdrug bindingtransferase activityion bindingorganic cyclic compound bindingheterocyclic compound bindingcofactor bindingsmall molecule bindingdrug bindingtransferase activityion bindingorganic cyclic compound bindingheterocyclic compound bindingcofactor bindingsmall molecule bindingdrug bindingtransferase activityion bindingorganic cyclic compound bindingheterocyclic compound bindingcofactor bindingsmall molecule bindingdrug bindingtransferase activityion bindingorganic cyclic compound bindingheterocyclic compound bindingcofactor bindingsmall molecule bindingdrug bindingtransferase activitytransferase activityion bindingion bindingorganic cyclic compoorganic cyclic compound bindingheterocyclic compounheterocyclic compound bindingcofactor bindingcofactor bindingsmall molecule bindismall molecule bindingdrug bindingdrug binding
TypeGO IDTermEv.Code
 biological_processGO:0009448 gamma-aminobutyric acid metabolic process IEA
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0003867 4-aminobutyrate transaminase activity IEA
 molecular_functionGO:0008483 transaminase activity IEA
 molecular_functionGO:0030170 pyridoxal phosphate binding IEA


Pathways (from Reactome)
Pathway description
Degradation of GABA


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000006031 abat / 4-aminobutyrate aminotransferase / P61922* / P80404* / 4-aminobutyrate aminotransferase, mitochondrial *  / complex






 

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