ENSDARG00000006288


Danio rerio

Features
Gene ID: ENSDARG00000006288
  
Biological name :prdm5
  
Synonyms : prdm5 / PR domain containing 5
  
Possible biological names infered from orthology : PR/SET domain 5 / Q9CXE0 / Q9NQX1
  
Species: Danio rerio
  
Chr. number: 23
Strand: -1
Band:
Gene start: 1926562
Gene end: 2037659
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000106969
Ensembl peptide - ENSDARP00000153711
NCBI entrez gene - 432371     See in Manteia.
swissprot - F1Q8J8
swissprot - Q6DRP9
ZFIN ID - ZDB-GENE-040708-1
Ensembl - ENSDARG00000006288
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PRDM5ENSGALG00000011963Gallus gallus
 PRDM5ENSG00000138738Homo sapiens
 Prdm5ENSMUSG00000029913Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
zgc:153116ENSDARG000000772055
zgc:165515ENSDARG000001163004


Protein motifs (from Interpro)
Interpro ID Name
 IPR001214  SET domain
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013087  Zinc finger C2H2-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IMP
 biological_processGO:0048701 embryonic cranial skeleton morphogenesis IMP
 biological_processGO:0048702 embryonic neurocranium morphogenesis IGI
 biological_processGO:0048703 embryonic viscerocranium morphogenesis IGI
 biological_processGO:0060828 regulation of canonical Wnt signaling pathway IMP
 biological_processGO:2000050 regulation of non-canonical Wnt signaling pathway IMP
 molecular_functionGO:0000976 transcription regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000041 mesoderm mesoderm cellular motility , abnormal
Show

 ZFA:0000079 telencephalon telencephalon aplastic , abnormal
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 ZFA:0000107 eye eye fused with eye , abnormal
eye aplastic , abnormal
eye position , abnormal
eye decreased size , abnormal
Show

 ZFA:0000112 gut gut hypoplastic , abnormal
Show

 ZFA:0000114 heart heart morphology , abnormal
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 ZFA:0000123 liver liver hypoplastic , abnormal
Show

 ZFA:0001094 whole organism whole organism decreased size , abnormal
whole organism quality , abnormal
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 ZFA:0001114 head head circular , abnormal
Show

 ZFA:0001205 Meckel s cartilage Meckels cartilage shortened , abnormal
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 ZFA:0001227 mandibular arch skeleton mandibular arch skeleton morphology , abnormal
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 ZFA:0001321 neurocranial trabecula neurocranial trabecula shortened , abnormal
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 ZFA:0001400 ceratohyal cartilage ceratohyal cartilage increased angle to ceratohyal cartilage , abnormal
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 ZFA:0001405 ethmoid cartilage ethmoid cartilage decreased size , abnormal
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 ZFA:0001517 ceratobranchial 2 cartilage ceratobranchial 2 cartilage absent , abnormal
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 ZFA:0001518 ceratobranchial 3 cartilage ceratobranchial 3 cartilage absent , abnormal
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 ZFA:0001519 ceratobranchial 4 cartilage ceratobranchial 4 cartilage absent , abnormal
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 ZFA:0001521 ceratobranchial 5 cartilage ceratobranchial 5 cartilage absent , abnormal
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 ZFA:0001580 neurocranium neurocranium decreased width , abnormal
neurocranium decreased size , abnormal
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 ZFA:0005625 hypophyseal fenestra hypophyseal fenestra increased width , abnormal
Show

 ZFA:0007016 anterior neural plate anterior neural plate decreased length , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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