ENSGALG00000011963


Gallus gallus

Features
Gene ID: ENSGALG00000011963
  
Biological name :PRDM5
  
Synonyms : PRDM5 / PR/SET domain 5
  
Possible biological names infered from orthology : PR domain containing 5 / Q9CXE0 / Q9NQX1
  
Species: Gallus gallus
  
Chr. number: 4
Strand: 1
Band:
Gene start: 54584372
Gene end: 54666309
  
Corresponding Affymetrix probe sets: Gga.10951.1.S1_s_at (Chicken Array)   GgaAffx.23709.2.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000019484
Ensembl peptide - ENSGALP00000052170
NCBI entrez gene - 422673     See in Manteia.
RefSeq - XM_420628
RefSeq - XM_004941229
swissprot - E1BV09
swissprot - A0A1D5PH93
Ensembl - ENSGALG00000011963
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 prdm5ENSDARG00000006288Danio rerio
 PRDM5ENSG00000138738Homo sapiens
 Prdm5ENSMUSG00000029913Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001214  SET domain
 IPR013087  Zinc finger C2H2-type
 IPR017125  PR-domain zinc finger protein PRDM5-like
 IPR022755  Zinc finger, double-stranded RNA binding


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0000278 mitotic cell cycle IEA
 biological_processGO:0016575 histone deacetylation IEA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IEA
 biological_processGO:0051567 histone H3-K9 methylation IEA
 biological_processGO:1990830 cellular response to leukemia inhibitory factor IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0016604 nuclear body IEA
 molecular_functionGO:0000976 transcription regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0001078 transcriptional repressor activity, RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0070491 repressing transcription factor binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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