ENSDARG00000006604


Danio rerio

Features
Gene ID: ENSDARG00000006604
  
Biological name :nectin3b
  
Synonyms : nectin3b / nectin cell adhesion molecule 3b / Q58EG3
  
Possible biological names infered from orthology : NECTIN3 / nectin cell adhesion molecule 3 / Q9JLB9 / Q9NQS3
  
Species: Danio rerio
  
Chr. number: 21
Strand: -1
Band:
Gene start: 21448996
Gene end: 21515466
  
Corresponding Affymetrix probe sets: Dr.18470.1.A1_at (Zebrafish Array)   Dr.6690.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000028921
Ensembl peptide - ENSDARP00000118438
Ensembl peptide - ENSDARP00000121706
NCBI entrez gene - 541491     See in Manteia.
RefSeq - NM_001014304
RefSeq Peptide - NP_001014326
swissprot - F1QBA4
swissprot - Q58EG3
ZFIN ID - ZDB-GENE-050327-14
Ensembl - ENSDARG00000006604
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 NECTIN3ENSGALG00000015367Gallus gallus
 Q9NQS3ENSG00000177707Homo sapiens
 Q9JLB9ENSMUSG00000022656Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CR936977.2 / Q9NQS3* / NECTIN3* / nectin cell adhesion molecule 3*ENSDARG0000010363848
nectin1b / nectin cell adhesion molecule 1b / Q9JKF6* / Q15223* / NECTIN1* / nectin cell adhesion molecule 1*ENSDARG0000008603423
nectin1a / nectin cell adhesion molecule 1a / Q9JKF6* / Q15223* / NECTIN1* / nectin cell adhesion molecule 1*ENSDARG0000006976721
nectin4 / nectin cell adhesion molecule 4 / Q96NY8*ENSDARG0000010314820
si:ch73-22o12.1 / PVR* / Q92692* / P15151* / P32507* / NECTIN2* / poliovirus receptor* / nectin cell adhesion molecule 2*ENSDARG0000006283119
si:ch211-119e14.9 / Q8R007* / Q96NY8* / NECTIN4* / nectin cell adhesion molecule 4*ENSDARG0000007741919
cadm2a / cell adhesion molecule 2a / CADM2* / Q8BLQ9* / Q8N3J6* / cell adhesion molecule 2*ENSDARG0000000993016
cadm3 / cell adhesion molecule 3 / Q8N126* / Q99N28*ENSDARG0000005701316
pvrl2l / poliovirus receptor-related 2 like / PVR* / Q92692* / P15151* / P32507* / NECTIN2* / poliovirus receptor* / nectin cell adhesion molecule 2*ENSDARG0000006339016
cadm1a / cell adhesion molecule 1a / CADM1* / Q8R5M8* / Q9BY67* / cell adhesion molecule 1*ENSDARG0000003107515
cadm2b / cell adhesion molecule 2b / CADM2* / Q8BLQ9* / Q8N3J6* / cell adhesion molecule 2*ENSDARG0000006263314
cadm4 / cell adhesion molecule 4 / Q8NFZ8* / Q8R464*ENSDARG0000004029113
cadm1b / cell adhesion molecule 1b / CADM1* / Q8R5M8* / Q9BY67* / cell adhesion molecule 1*ENSDARG0000004267713
si:ch211-222f23.6ENSDARG0000004288013
si:ch211-141e20.2ENSDARG0000009334913
si:ch211-214p13.3ENSDARG0000008740311
BX120005.1 / CRTAM* / O95727* / cytotoxic and regulatory T cell molecule*ENSDARG000000893278


Protein motifs (from Interpro)
Interpro ID Name
 IPR003598  Immunoglobulin subtype 2
 IPR003599  Immunoglobulin subtype
 IPR007110  Immunoglobulin-like domain
 IPR013106  Immunoglobulin V-set domain
 IPR013162  CD80-like, immunoglobulin C2-set
 IPR013783  Immunoglobulin-like fold
 IPR033319  Nectin-3


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IBA
 biological_processGO:0007157 heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules IBA
 biological_processGO:0007286 spermatid development IEA
 biological_processGO:0008037 cell recognition IBA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0005911 cell-cell junction IEA
 cellular_componentGO:0005913 cell-cell adherens junction IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005102 signaling receptor binding IBA
 molecular_functionGO:0042803 protein homodimerization activity IBA
 molecular_functionGO:0046982 protein heterodimerization activity IEA
 molecular_functionGO:0050839 cell adhesion molecule binding IBA


Pathways (from Reactome)
Pathway description
Adherens junctions interactions
Nectin/Necl trans heterodimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000006604 Q58EG3 / nectin3b / nectin cell adhesion molecule 3b / Q9JLB9* / Q9NQS3* / NECTIN3* / nectin cell adhesion molecule 3*  / complex / reaction
 ENSDARG00000063390 pvrl2l / poliovirus receptor-related 2 like / PVR* / Q92692* / P15151* / P32507* / NECTIN2* / poliovirus receptor* / nectin cell adhesion molecule 2*  / complex / reaction
 ENSDARG00000057013 cadm3 / cell adhesion molecule 3 / Q8N126* / Q99N28*  / complex / reaction
 ENSDARG00000077419 si:ch211-119e14.9 / Q8R007* / Q96NY8* / NECTIN4* / nectin cell adhesion molecule 4*  / complex / reaction






 

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