ENSDARG00000007220


Danio rerio

Features
Gene ID: ENSDARG00000007220
  
Biological name :ncam1b
  
Synonyms : ncam1b / neural cell adhesion molecule 1b
  
Possible biological names infered from orthology : NCAM1 / neural cell adhesion molecule 1 / neural cell adhesion molecule 1 isoform 3 / P13591
  
Species: Danio rerio
  
Chr. number: 15
Strand: -1
Band:
Gene start: 18368809
Gene end: 18574716
  
Corresponding Affymetrix probe sets: Dr.12600.1.S1_at (Zebrafish Array)   NM_131831_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000114314
Ensembl peptide - ENSDARP00000021088
Ensembl peptide - ENSDARP00000115412
Ensembl peptide - ENSDARP00000118309
NCBI entrez gene - 114442     See in Manteia.
RefSeq - NM_131831
RefSeq Peptide - NP_571906
swissprot - F1Q720
swissprot - E9QJ12
swissprot - F1QIV2
swissprot - F1QMM3
ZFIN ID - ZDB-GENE-010822-2
Ensembl - ENSDARG00000007220
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 NCAM1ENSGALG00000007839Gallus gallus
 NCAM1ENSG00000149294Homo sapiens
 Ncam1ENSMUSG00000039542Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ncam1a / neural cell adhesion molecule 1a / NCAM1* / P13591* / neural cell adhesion molecule 1* / neural cell adhesion molecule 1 isoform 3 *ENSDARG0000005618152
ncam2 / neural cell adhesion molecule 2 / O15394* / O35136*ENSDARG0000001746630
robo1 / roundabout, axon guidance receptor, homolog 1 (Drosophila) / Q9Y6N7* / roundabout guidance receptor 1*ENSDARG0000002678419
ncam3 / neural cell adhesion molecule 3ENSDARG0000008958619
robo3 / roundabout, axon guidance receptor, homolog 3 (Drosophila) / Q96MS0* / roundabout guidance receptor 3*ENSDARG0000000564518
robo2 / roundabout, axon guidance receptor, homolog 2 (Drosophila)ENSDARG0000001489116
cdon / cell adhesion associated, oncogene regulated / Q32MD9* / Q4KMG0* / Cell adhesion molecule-related/down-regulated by oncos *ENSDARG0000006132815
boc / BOC cell adhesion associated, oncogene regulated / Q9BWV1*ENSDARG0000007433514
robo4 / roundabout, axon guidance receptor, homolog 4 (Drosophila) / Q8WZ75* / roundabout guidance receptor 4*ENSDARG0000000938710
BX908388.2ENSDARG000001137745
zgc:77784 / ROBO3* / Q96MS0* / roundabout guidance receptor 3*ENSDARG000000426462
robo2 / roundabout, axon guidance receptor, homolog 2 (Drosophila)ENSDARG000000783662


Protein motifs (from Interpro)
Interpro ID Name
 IPR003598  Immunoglobulin subtype 2
 IPR003599  Immunoglobulin subtype
 IPR003961  Fibronectin type III
 IPR007110  Immunoglobulin-like domain
 IPR009138  Neural cell adhesion
 IPR013098  Immunoglobulin I-set
 IPR013783  Immunoglobulin-like fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007411 axon guidance IMP
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
NCAM signaling for neurite out-growth
NCAM1 interactions
Signal transduction by L1
RAF/MAP kinase cascade


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000320 caudal commissure caudal commissure axon decreased length , abnormal
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 ZFA:0009052 motor neuron motor neuron axon increased branchiness , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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