ENSDARG00000007465


Danio rerio

Features
Gene ID: ENSDARG00000007465
  
Biological name :tdrd1
  
Synonyms : tdrd1 / tudor domain containing 1
  
Possible biological names infered from orthology : Q99MV1 / Q9BXT4 / Tudor domain-containing protein 1
  
Species: Danio rerio
  
Chr. number: 12
Strand: -1
Band:
Gene start: 30344076
Gene end: 30359540
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000148308
Ensembl peptide - ENSDARP00000127225
Ensembl peptide - ENSDARP00000127267
Ensembl peptide - ENSDARP00000150322
NCBI entrez gene - 553522     See in Manteia.
RefSeq - NM_001164028
RefSeq Peptide - NP_001157500
swissprot - F1Q7S6
swissprot - U3JAF7
ZFIN ID - ZDB-GENE-070803-1
Ensembl - ENSDARG00000007465
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TDRD1ENSGALG00000046180Gallus gallus
 TDRD1ENSG00000095627Homo sapiens
 Tdrd1ENSMUSG00000025081Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tdrd6 / tudor domain containing 6 / O60522* / tudor domain-containing protein 6 isoform 3 *ENSDARG0000007005216
si:dkeyp-93d12.1 / B5MCY1* / TDRD15* / tudor domain containing 15*ENSDARG0000001403915
rnf17 / ring finger protein 17 / Q99MV7* / Q9BXT8*ENSDARG0000005638714
tdrd5 / Q1L981 / tudor domain containing 5 / Q8NAT2* / Q5VCS6* / Tudor domain-containing protein 5 *ENSDARG000000714508
si:ch211-189e2.3 / TDRD6* / O60522* / tudor domain containing 6* / tudor domain-containing protein 6 isoform 3 *ENSDARG000000899548
tdrkh / tudor and KH domain containing / Q80VL1* / Q9Y2W6* / Mus musculus tudor and KH domain containing protein (Tdrkh), transcript variant 4, mRNA.*ENSDARG000000534745


Protein motifs (from Interpro)
Interpro ID Name
 IPR002893  Zinc finger, MYND-type
 IPR002999  Tudor domain
 IPR035437  SNase-like, OB-fold superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0009016 germ line cell germ line cell decreased amount , abnormal
Show

 ZFA:0009288 primordial germ cell primordial germ cell P granule increased distance primordial germ cell mitochondrion, abnormal
primordial germ cell P granule physical object quality , abnormal
primordial germ cell P granule decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2025
contact: otassy@igbmc.fr