ENSGALG00000046180


Gallus gallus
zincfingermynd-typetudordomainnucleasesnase-likeob-foldgermcellgenesilencingrnapirnaprocessdnabodyppi-body

Features
Gene ID: ENSGALG00000046180
  
Biological name :TDRD1
  
Synonyms : TDRD1 / tudor domain containing 1
  
Possible biological names infered from orthology : Q99MV1 / Q9BXT4 / Tudor domain-containing protein 1
  
Species: Gallus gallus
  
Chr. number: 6
Strand: 1
Band:
Gene start: 27739027
Gene end: 27755635
  
Corresponding Affymetrix probe sets: Gga.14753.1.S1_at (Chicken Array)   Gga.14753.1.S1_s_at (Chicken Array)   GgaAffx.5656.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000062907
NCBI entrez gene - 423906     See in Manteia.
RefSeq - XM_015288954
RefSeq - XM_421768
swissprot - A0A1L1RVQ1
Ensembl - ENSGALG00000046180
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tdrd1ENSDARG00000007465Danio rerio
 TDRD1ENSG00000095627Homo sapiens
 Tdrd1ENSMUSG00000025081Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RNF17* / Q99MV7* / Q9BXT8* / ring finger protein 17*ENSGALG0000004541419
TDRD15 / tudor domain containing 15 / B5MCY1*ENSGALG0000001649217
TDRD6* / O60522* / tudor domain containing 6* / tudor domain-containing protein 6 isoform 3 *ENSGALG0000004427911
TDRKH / tudor and KH domain containing / Q80VL1* / Q9Y2W6* / Mus musculus tudor and KH domain containing protein (Tdrkh), transcript variant 4, mRNA.*ENSGALG000000318127
TDRD5 / tudor domain containing 5 / Q5VCS6* / Q8NAT2* / Tudor domain-containing protein 5 *ENSGALG000000336347


Protein motifs (from Interpro)
Interpro ID Name
 IPR002893  Zinc finger, MYND-type
 IPR002999  Tudor domain
 IPR016071  Staphylococcal nuclease (SNase-like), OB-fold


Gene Ontology (GO)
anatomical structure developmentcellular developmental processmulticellular organism reproductionorganic substance metabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processmethylationanatomical structure developmentcellular developmental processmulticellular organism reproductionorganic substance metabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processmethylationanatomical structure developmentcellular developmental processmulticellular organism reproductionorganic substance metabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processmethylationanatomical structure developmentcellular developmental processmulticellular organism reproductionorganic substance metabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processmethylationanatomical structure developmentcellular developmental processmulticellular organism reproductionorganic substance metabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processmethylationanatomical structure developmentcellular developmental processmulticellular organism reproductionorganic substance metabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processmethylationanatomical structure developmentcellular developmental processmulticellular organism reproductionorganic substance metabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processmethylationanatomical structure developmentcellular developmental processmulticellular organism reproductionorganic substance metabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processmethylationanatomical structure developmentcellular developmental processmulticellular organism reproductionorganic substance metabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processmethylationanatomical structure developmentcellular developmental processmulticellular organism reproductionorganic substance metabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processmethylationanatomical structanatomical structure developmentcellular developmcellular developmental processmulticellular orgmulticellular organism reproductionorganic substanceorganic substance metabolic processnitrogen compoundnitrogen compound metabolic processcellular metabolicellular metabolic processprimary metabolicprimary metabolic processmethylationmethylation
ion bindingion bindingion bindingion bindingion bindingion bindingion bindingion bindingion bindingion bindingion bindingion binding
cellprotein-containing complexorganellecellprotein-containing complexorganellecellprotein-containing complexorganellecellprotein-containing complexorganellecellprotein-containing complexorganellecellprotein-containing complexorganellecellprotein-containing complexorganellecellprotein-containing complexorganellecellprotein-containing complexorganellecellprotein-containing complexorganellecellcellprotein-containing complexprotein-containing complexorganelleorganelle
TypeGO IDTermEv.Code
 biological_processGO:0007281 germ cell development IEA
 biological_processGO:0007283 spermatogenesis IEA
 biological_processGO:0031047 gene silencing by RNA IEA
 biological_processGO:0034587 piRNA metabolic process IEA
 biological_processGO:0043046 DNA methylation involved in gamete generation IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0033391 chromatoid body IEA
 cellular_componentGO:0043186 P granule IEA
 cellular_componentGO:0071546 pi-body IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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