ENSDARG00000007823


Danio rerio

Features
Gene ID: ENSDARG00000007823
  
Biological name :atf3
  
Synonyms : activating transcription factor 3 / atf3
  
Possible biological names infered from orthology : Cyclic AMP-dependent transcription factor ATF-3 / P18847 / Q60765
  
Species: Danio rerio
  
Chr. number: 20
Strand: 1
Band:
Gene start: 37794633
Gene end: 37800737
  
Corresponding Affymetrix probe sets: Dr.14282.1.S1_at (Zebrafish Array)   NM_200964_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000027550
NCBI entrez gene - 393939     See in Manteia.
RefSeq - NM_200964
RefSeq Peptide - NP_957258
swissprot - Q7ZVX7
ZFIN ID - ZDB-GENE-040426-728
Ensembl - ENSDARG00000007823
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ATF3ENSGALG00000025887Gallus gallus
 ATF3ENSG00000162772Homo sapiens
 Atf3ENSMUSG00000026628Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
jdp2a / Jun dimerization protein 2a / JDP2* / Q8WYK2* / P97875* / Jun dimerization protein 2*ENSDARG0000004013739
jdp2b / Q6DGM8 / Jun dimerization protein 2bENSDARG0000002013335


Protein motifs (from Interpro)
Interpro ID Name
 IPR000837  AP-1 transcription factor
 IPR004827  Basic-leucine zipper domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0009615 response to virus IDA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr