ENSDARG00000012060


Danio rerio

Features
Gene ID: ENSDARG00000012060
  
Biological name :thbs3b
  
Synonyms : Q1L8P7 / thbs3b / thrombospondin 3b
  
Possible biological names infered from orthology : P49746 / Q05895 / THBS3 / thrombospondin 3
  
Species: Danio rerio
  
Chr. number: 19
Strand: -1
Band:
Gene start: 24419693
Gene end: 24443867
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000043132
Ensembl peptide - ENSDARP00000132464
Ensembl peptide - ENSDARP00000085258
NCBI entrez gene - 571317     See in Manteia.
RefSeq - NM_001045214
RefSeq Peptide - NP_001038679
swissprot - B3DIU2
swissprot - A0A0R4IH11
swissprot - Q1L8P7
ZFIN ID - ZDB-GENE-060503-84
Ensembl - ENSDARG00000012060
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 THBS3ENSG00000169231Homo sapiens
 Thbs3ENSMUSG00000028047Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
thbs3a / thrombospondin 3a / THBS3* / Q05895* / P49746* / thrombospondin 3*ENSDARG0000007764174
thbs4b / thrombospondin 4b / THBS4* / Q9Z1T2* / P35443* / thrombospondin 4*ENSDARG0000002007258
thbs4a / thrombospondin 4a / THBS4* / P35443* / thrombospondin 4*ENSDARG0000010277755
COMP / si:ch211-43f4.1 / P49747* / Q9R0G6* / cartilage oligomeric matrix protein*ENSDARG0000009843150
thbs1b / thrombospondin 1b / THBS1* / P07996* / thrombospondin 1*ENSDARG0000001078541
thbs2a / thrombospondin 2a / THBS2* / Q03350* / P35442* / thrombospondin 2*ENSDARG0000006041041
thbs2b / thrombospondin 2b / THBS2* / Q03350* / P35442* / thrombospondin 2*ENSDARG0000007381041


Protein motifs (from Interpro)
Interpro ID Name
 IPR000742  EGF-like domain
 IPR001791  Laminin G domain
 IPR001881  EGF-like calcium-binding domain
 IPR003367  Thrombospondin, type 3-like repeat
 IPR008859  Thrombospondin, C-terminal
 IPR013032  EGF-like, conserved site
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR017897  Thrombospondin, type 3 repeat
 IPR018097  EGF-like calcium-binding, conserved site
 IPR024665  Thrombospondin/cartilage oligomeric matrix protein, coiled-coil domain
 IPR028507  Thrombospondin-3
 IPR028974  TSP type-3 repeat


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0030198 extracellular matrix organization IEA
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0031012 extracellular matrix IEA
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0008201 heparin binding IEA


Pathways (from Reactome)
Pathway description
Signaling by PDGF


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000038139 pdgfbb / platelet-derived growth factor beta polypeptide b / PDGFB* / P01127* / platelet derived growth factor subunit B* / platelet derived growth factor, B polypeptide*  / complex / reaction
 ENSDARG00000110069 pdgfaa / platelet-derived growth factor alpha polypeptide a / PDGFA* / P04085* / platelet derived growth factor subunit A*  / complex / reaction
 ENSDARG00000086778 pdgfba / platelet-derived growth factor beta polypeptide a / PDGFB* / P01127* / platelet derived growth factor subunit B* / platelet derived growth factor, B polypeptide*  / complex / reaction






 

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