ENSDARG00000077641


Danio rerio

Features
Gene ID: ENSDARG00000077641
  
Biological name :thbs3a
  
Synonyms : thbs3a / thrombospondin 3a
  
Possible biological names infered from orthology : P49746 / Q05895 / THBS3 / thrombospondin 3
  
Species: Danio rerio
  
Chr. number: 16
Strand: -1
Band:
Gene start: 42900238
Gene end: 42933332
  
Corresponding Affymetrix probe sets: Dr.1089.1.S1_at (Zebrafish Array)   NM_173225_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000057304
NCBI entrez gene - 252849     See in Manteia.
RefSeq - NM_173225
RefSeq Peptide - NP_775332
swissprot - F1QKL1
ZFIN ID - ZDB-GENE-020708-3
Ensembl - ENSDARG00000077641
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 THBS3ENSG00000169231Homo sapiens
 Thbs3ENSMUSG00000028047Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q1L8P7 / thbs3b / thrombospondin 3b / THBS3* / Q05895* / P49746* / thrombospondin 3*ENSDARG0000001206071
thbs4b / thrombospondin 4b / THBS4* / Q9Z1T2* / P35443* / thrombospondin 4*ENSDARG0000002007258
thbs4a / thrombospondin 4a / THBS4* / P35443* / thrombospondin 4*ENSDARG0000010277755
COMP / si:ch211-43f4.1 / P49747* / Q9R0G6* / cartilage oligomeric matrix protein*ENSDARG0000009843150
thbs1b / thrombospondin 1b / THBS1* / P07996* / thrombospondin 1*ENSDARG0000001078541
thbs2a / thrombospondin 2a / THBS2* / Q03350* / P35442* / thrombospondin 2*ENSDARG0000006041041
thbs2b / thrombospondin 2b / THBS2* / Q03350* / P35442* / thrombospondin 2*ENSDARG0000007381040


Protein motifs (from Interpro)
Interpro ID Name
 IPR000742  EGF-like domain
 IPR001791  Laminin G domain
 IPR001881  EGF-like calcium-binding domain
 IPR003367  Thrombospondin, type 3-like repeat
 IPR008859  Thrombospondin, C-terminal
 IPR009030  Growth factor receptor cysteine-rich domain superfamily
 IPR013032  EGF-like, conserved site
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR017897  Thrombospondin, type 3 repeat
 IPR018097  EGF-like calcium-binding, conserved site
 IPR024665  Thrombospondin/cartilage oligomeric matrix protein, coiled-coil domain
 IPR028507  Thrombospondin-3
 IPR028974  TSP type-3 repeat


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0030198 extracellular matrix organization IEA
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0031012 extracellular matrix IEA
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0008201 heparin binding IEA


Pathways (from Reactome)
Pathway description
Signaling by PDGF


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001462 somite border somite border morphology , ameliorated
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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