ENSDARG00000012248


Danio rerio

Features
Gene ID: ENSDARG00000012248
  
Biological name :rgma
  
Synonyms : repulsive guidance molecule family member a / rgma
  
Possible biological names infered from orthology : Q6PCX7 / Q96B86 / Repulsive guidance molecule A / repulsive guidance molecule BMP co-receptor a
  
Species: Danio rerio
  
Chr. number: 18
Strand: 1
Band:
Gene start: 24919614
Gene end: 24932329
  
Corresponding Affymetrix probe sets: Dr.18272.1.S1_at (Zebrafish Array)   Dr.18272.2.A1_at (Zebrafish Array)   NM_001045011_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000027966
Ensembl peptide - ENSDARP00000146366
Ensembl peptide - ENSDARP00000155989
NCBI entrez gene - 414272     See in Manteia.
RefSeq - NM_001045011
RefSeq Peptide - NP_001038476
swissprot - Q1LVM8
ZFIN ID - ZDB-GENE-040527-1
Ensembl - ENSDARG00000012248
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RGMAENSGALG00000039173Gallus gallus
 RGMAENSG00000182175Homo sapiens
 RgmaENSMUSG00000070509Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rgmb / repulsive guidance molecule family member b / Q6NW40* / repulsive guidance molecule BMP co-receptor b*ENSDARG0000007932344
rgmd / RGM domain family, member DENSDARG0000003401341
hfe2 / hemochromatosis type 2 / Q6ZVN8* / Q7TQ32* / Hemojuvelin * / hemochromatosis type 2 (juvenile)*ENSDARG0000003049434


Protein motifs (from Interpro)
Interpro ID Name
 IPR009496  Repulsive guidance molecule, C-terminal
 IPR010536  Repulsive guidance molecule, N-terminal
 IPR033607  Repulsive guidance molecule A


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0010975 regulation of neuron projection development IEA
 biological_processGO:0030509 BMP signaling pathway IEA
 biological_processGO:0048681 negative regulation of axon regeneration IEA
 cellular_componentGO:0005886 plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0046658 anchored component of plasma membrane ISS
 molecular_functionGO:0015026 coreceptor activity IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000123 liver liver decreased size , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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