ENSDARG00000013457


Danio rerio

Features
Gene ID: ENSDARG00000013457
  
Biological name :mtrex
  
Synonyms : Mtr4 exosome RNA helicase / mtrex
  
Possible biological names infered from orthology : P42285 / Q9CZU3 / Skiv2l2 / Superkiller viralicidic activity 2-like 2
  
Species: Danio rerio
  
Chr. number: 10
Strand: 1
Band:
Gene start: 8197827
Gene end: 8266094
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000024380
NCBI entrez gene - 406795     See in Manteia.
RefSeq - NM_214768
RefSeq Peptide - NP_999933
swissprot - F1QD61
ZFIN ID - ZDB-GENE-040426-2854
Ensembl - ENSDARG00000013457
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SKIV2L2ENSGALG00000014709Gallus gallus
 MTREXENSG00000039123Homo sapiens
 Q9CZU3ENSMUSG00000016018Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
skiv2l / SKI2 homolog, superkiller viralicidic activity 2-like / Q15477* / Ski2 like RNA helicase* / superkiller viralicidic activity 2-like (S. cerevisiae)*ENSDARG0000006220635


Protein motifs (from Interpro)
Interpro ID Name
 IPR001650  Helicase, C-terminal
 IPR011545  DEAD/DEAH box helicase domain
 IPR012961  ATP-dependent RNA helicase Ski2, C-terminal
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR016438  ATP-dependent RNA helicase Ski2-like
 IPR025696  rRNA-processing arch domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000460 maturation of 5.8S rRNA IBA
 biological_processGO:0006401 RNA catabolic process IBA
 biological_processGO:0031101 fin regeneration IMP
 biological_processGO:0051781 positive regulation of cell division IMP
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003724 RNA helicase activity IEA
 molecular_functionGO:0004004 ATP-dependent RNA helicase activity IBA
 molecular_functionGO:0005524 ATP binding IEA


Pathways (from Reactome)
Pathway description
Major pathway of rRNA processing in the nucleolus and cytosol
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain decreased size , abnormal
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 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0009091 melanocyte melanocyte decreased amount , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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