ENSDARG00000014402


Danio rerio
chromosomesmc1brecfrecnsmcn-terminalsmcsflexiblehingestructuralmaintenancechromosomesproteinp-loopcontainingnucleosidetriphosphatehydrolaseorganizationnucleusatpbinding

Features
Gene ID: ENSDARG00000014402
  
Biological name :smc1b
  
Synonyms : smc1b / structural maintenance of chromosomes 1B
  
Possible biological names infered from orthology : Q8NDV3 / Q920F6
  
Species: Danio rerio
  
Chr. number: 25
Strand: -1
Band:
Gene start: 16554817
Gene end: 16581233
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000128642
swissprot - X1WEJ1
ZFIN ID - ZDB-GENE-091217-1
Ensembl - ENSDARG00000014402
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SMC1BENSGALG00000014228Gallus gallus
 SMC1BENSG00000077935Homo sapiens
 Smc1bENSMUSG00000022432Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
smc1a / structural maintenance of chromosomes 1A / Q14683* / Q9CU62*ENSDARG0000005575448
smc1al / structural maintenance of chromosomes 1A, like / SMC1A* / Q9CU62* / Q14683* / structural maintenance of chromosomes 1A*ENSDARG0000005820348


Protein motifs (from Interpro)
Interpro ID Name
 IPR003395  RecF/RecN/SMC, N-terminal
 IPR010935  SMCs flexible hinge
 IPR024704  Structural maintenance of chromosomes protein
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
cellular component organizationcellular component organizationcellular component organizationcellular component organizationcellular component organizationcellular component organizationcellular component organizationcellular component organizationcellular component organizationcellular component organizationcellular component organizationcellular component organization
ion bindingcarbohydrate derivative bindingorganic cyclic compound bindingheterocyclic compound bindingsmall molecule bindingdrug bindingion bindingcarbohydrate derivative bindingorganic cyclic compound bindingheterocyclic compound bindingsmall molecule bindingdrug bindingion bindingcarbohydrate derivative bindingorganic cyclic compound bindingheterocyclic compound bindingsmall molecule bindingdrug bindingion bindingcarbohydrate derivative bindingorganic cyclic compound bindingheterocyclic compound bindingsmall molecule bindingdrug bindingion bindingcarbohydrate derivative bindingorganic cyclic compound bindingheterocyclic compound bindingsmall molecule bindingdrug bindingion bindingcarbohydrate derivative bindingorganic cyclic compound bindingheterocyclic compound bindingsmall molecule bindingdrug bindingion bindingcarbohydrate derivative bindingorganic cyclic compound bindingheterocyclic compound bindingsmall molecule bindingdrug bindingion bindingcarbohydrate derivative bindingorganic cyclic compound bindingheterocyclic compound bindingsmall molecule bindingdrug bindingion bindingcarbohydrate derivative bindingorganic cyclic compound bindingheterocyclic compound bindingsmall molecule bindingdrug bindingion bindingcarbohydrate derivative bindingorganic cyclic compound bindingheterocyclic compound bindingsmall molecule bindingdrug bindingion bindingion bindingcarbohydrate derivativecarbohydrate derivative bindingorganic cyclic compoundorganic cyclic compound bindingheterocyclic compound bheterocyclic compound bindingsmall molecule bindingsmall molecule bindingdrug bindingdrug binding
cellorganellecellorganellecellorganellecellorganellecellorganellecellorganellecellorganellecellorganellecellorganellecellorganellecellcellorganelleorganelle
TypeGO IDTermEv.Code
 biological_processGO:0051276 chromosome organization IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005694 chromosome IEA
 molecular_functionGO:0005524 ATP binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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