ENSDARG00000014746


Danio rerio

Features
Gene ID: ENSDARG00000014746
  
Biological name :rbfox1
  
Synonyms : Q642J5 / rbfox1 / RNA binding fox-1 homolog 1
  
Possible biological names infered from orthology : Q9JJ43 / Q9NWB1 / RNA binding 1
  
Species: Danio rerio
  
Chr. number: 3
Strand: -1
Band:
Gene start: 27982269
Gene end: 28428198
  
Corresponding Affymetrix probe sets: Dr.11261.1.A1_at (Zebrafish Array)   Dr.15195.1.A1_at (Zebrafish Array)   Dr.16723.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000138682
Ensembl peptide - ENSDARP00000155158
Ensembl peptide - ENSDARP00000107099
Ensembl peptide - ENSDARP00000125654
Ensembl peptide - ENSDARP00000125695
Ensembl peptide - ENSDARP00000125806
Ensembl peptide - ENSDARP00000126220
NCBI entrez gene - 449554     See in Manteia.
swissprot - A0A0R4IV43
swissprot - I3IRZ3
swissprot - I3IS31
swissprot - I3ISD3
swissprot - I3ITF6
swissprot - Q642J5
ZFIN ID - ZDB-GENE-040927-11
Ensembl - ENSDARG00000014746
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RBFOX1ENSGALG00000034325Gallus gallus
 Q9NWB1ENSG00000078328Homo sapiens
 Q9JJ43ENSMUSG00000008658Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rbfox3a / RNA binding fox-1 homolog 3a / RBFOX3* / Q8BIF2* / A6NFN3* / RNA binding 3 * / RNA binding fox-1 homolog 3*ENSDARG0000001008364
rbfox3b / RNA binding fox-1 homolog 3b / RBFOX3* / Q8BIF2* / A6NFN3* / RNA binding 3 * / RNA binding fox-1 homolog 3*ENSDARG0000007431055
Q7ZT82 / rbfox1l / RNA binding fox-1 homolog 1, likeENSDARG0000002118450
rbfox2 / RNA binding fox-1 homolog 2 / O43251*ENSDARG0000005218244


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR017325  RNA binding protein Fox-1
 IPR025670  Fox-1 C-terminal domain
 IPR034237  FOX1, RNA recognition motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000381 regulation of alternative mRNA splicing, via spliceosome IMP
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0021854 hypothalamus development IMP
 biological_processGO:0043484 regulation of RNA splicing IEA
 biological_processGO:0060047 heart contraction IMP
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003729 mRNA binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain edematous , abnormal
Show

 ZFA:0000009 cardiac ventricle cardiac ventricle collapsed , abnormal
cardiac ventricle decreased contractility , abnormal
Show

 ZFA:0000114 heart heart decreased functionality , abnormal
heart alternative mRNA splicing, via spliceosome process quality , abnormal
Show

 ZFA:0000471 atrium atrium dilated , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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