ENSDARG00000021184


Danio rerio

Features
Gene ID: ENSDARG00000021184
  
Biological name :rbfox1l
  
Synonyms : Q7ZT82 / rbfox1l / RNA binding fox-1 homolog 1, like
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 16
Strand: -1
Band:
Gene start: 31900127
Gene end: 31919568
  
Corresponding Affymetrix probe sets: Dr.21808.1.A1_at (Zebrafish Array)   DrAffx.1.52.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000016637
NCBI entrez gene - 407613     See in Manteia.
swissprot - B3DK66
swissprot - Q7ZT82
ZFIN ID - ZDB-GENE-040923-2
Ensembl - ENSDARG00000021184
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rbfox3a / RNA binding fox-1 homolog 3a / RBFOX3* / Q8BIF2* / A6NFN3* / RNA binding 3 * / RNA binding fox-1 homolog 3*ENSDARG0000001008350
rbfox1 / Q642J5 / RNA binding fox-1 homolog 1 / Q9NWB1* / Q9JJ43* / RNA binding 1 *ENSDARG0000001474649
rbfox3b / RNA binding fox-1 homolog 3b / RBFOX3* / Q8BIF2* / A6NFN3* / RNA binding 3 * / RNA binding fox-1 homolog 3*ENSDARG0000007431042
rbfox2 / RNA binding fox-1 homolog 2 / O43251*ENSDARG0000005218235


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR017325  RNA binding protein Fox-1
 IPR025670  Fox-1 C-terminal domain
 IPR034237  FOX1, RNA recognition motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000381 regulation of alternative mRNA splicing, via spliceosome IBA
 biological_processGO:0003015 heart process IMP
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0007399 nervous system development IBA
 biological_processGO:0008380 RNA splicing IDA
 biological_processGO:0043484 regulation of RNA splicing IEA
 biological_processGO:0048739 cardiac muscle fiber development IGI
 biological_processGO:0048741 skeletal muscle fiber development IGI
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005737 cytoplasm IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IGI
 molecular_functionGO:0003729 mRNA binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000114 heart heart morphology , abnormal
heart decreased functionality , abnormal
Show

 ZFA:0001094 whole organism whole organism paralysed , abnormal
whole organism decreased coiling , abnormal
Show

 ZFA:0001319 myocardium myocardium non-functional , abnormal
Show

 ZFA:0005145 muscle muscle striated muscle thin filament disorganized , abnormal
muscle myofibril disorganized , abnormal
muscle refractivity , abnormal
muscle sarcoplasmic reticulum disorganized , abnormal
muscle myofibril undulate , abnormal
muscle sarcomere disorganized , abnormal
muscle sarcomere decreased amount , abnormal
muscle Z disc misaligned with muscle Z disc, abnormal
Show

 ZFA:0005277 skeletal muscle skeletal muscle paralysed , abnormal
skeletal muscle decreased force , abnormal
skeletal muscle transverse plane shape , abnormal
skeletal muscle transverse plane structure , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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