ENSDARG00000015404


Danio rerio

Features
Gene ID: ENSDARG00000015404
  
Biological name :arl3l2
  
Synonyms : ADP-ribosylation factor-like 3, like 2 / arl3l2
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 14
Strand: 1
Band:
Gene start: 909769
Gene end: 917065
  
Corresponding Affymetrix probe sets: Dr.9845.1.S1_at (Zebrafish Array)   Dr.9845.2.A1_at (Zebrafish Array)   NM_200719_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000142265
Ensembl peptide - ENSDARP00000008099
NCBI entrez gene - 393692     See in Manteia.
RefSeq - NM_200719
RefSeq - XM_005169564
RefSeq Peptide - NP_957013
swissprot - Q6PC43
swissprot - A0A140LG87
ZFIN ID - ZDB-GENE-040426-1678
Ensembl - ENSDARG00000015404
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000003134Gallus gallus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
arl3l1 / ADP-ribosylation factor-like 3, like 1ENSDARG0000011110687
zgc:110197 / ARL3 (1 of many) / ARL3* / P36405* / Q9WUL7* / ADP ribosylation factor like GTPase 3* / ADP-ribosylation factor-like protein 3 *ENSDARG0000005679474
arl3 / Q1MTE5 / ADP-ribosylation factor-like 3 / P36405* / Q9WUL7* / ADP ribosylation factor like GTPase 3* / ADP-ribosylation factor-like protein 3 *ENSDARG0000007140974
arl2 / ADP-ribosylation factor-like 2 / Q9D0J4* / P36404* / ARL2-SNX15* / ADP ribosylation factor like GTPase 2* / ARL2-SNX15 readthrough (NMD candidate)* / ADP-ribosylation factor-like protein 2 *ENSDARG0000006949647
arf3a / ADP-ribosylation factor 3a / ARF3* / P61204* / P61205* / ADP ribosylation factor 3*ENSDARG0000007053944
arf1 / ADP-ribosylation factor 1ENSDARG0000000948443
arf2a / ADP-ribosylation factor 2aENSDARG0000001476343
arf2b / ADP-ribosylation factor 2b / Arf2* / Q8BSL7* / ADP-ribosylation factor 2 *ENSDARG0000001639343
arf3b / ADP-ribosylation factor 3bENSDARG0000003699843
arf4a / ADP-ribosylation factor 4a / ARF5* / P84084* / P84085* / ADP ribosylation factor 5*ENSDARG0000004598942
arf6b / ADP-ribosylation factor 6b / ARF6* / P62330* / P62331* / ADP ribosylation factor 6*ENSDARG0000005292842
arf5 / ADP-ribosylation factor 5 / P84085*ENSDARG0000007047242
arf6a / ADP-ribosylation factor 6a / ARF6* / P62330* / ADP ribosylation factor 6*ENSDARG0000010162642
zgc:77650 / ARF5* / P84084* / P84085* / ADP ribosylation factor 5*ENSDARG0000011389942
arl14 / ADP-ribosylation factor-like 14 / Q8N4G2* / ADP ribosylation factor like GTPase 14*ENSDARG0000006322341
trim23 / tripartite motif containing 23 / P36406* / Q8BGX0* / E3 ubiquitin-protein ligase TRIM23 *ENSDARG0000006942040
arf4b / ADP-ribosylation factor 4bENSDARG0000010033938
arl11 / ADP-ribosylation factor-like 11 / Q6P3A9* / Q969Q4* / ADP ribosylation factor like GTPase 11* / ADP-ribosylation factor-like protein 11 *ENSDARG0000003663737
si:ch1073-165f9.2ENSDARG0000007387637
zgc:110286ENSDARG0000007421036


Protein motifs (from Interpro)
Interpro ID Name
 IPR005225  Small GTP-binding protein domain
 IPR006689  Small GTPase superfamily, ARF/SAR type
 IPR024156  Small GTPase superfamily, ARF type
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0048841 regulation of axon extension involved in axon guidance IMP
 biological_processGO:0071632 optomotor response IMP
 cellular_componentGO:0005622 intracellular IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0005525 GTP binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000359 habenular commissure habenular commissure decreased thickness , abnormal
habenular commissure discontinuous , abnormal
habenular commissure axon extension involved in axon guidance decreased process quality , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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