Manteia

ENSDARG00000101626

Danio rerio

Features

Gene ID:	ENSDARG00000101626

Biological name :	arf6a

Synonyms :	ADP-ribosylation factor 6a / arf6a

Possible biological names infered from orthology :	ADP ribosylation factor 6 / ARF6 / P62330 / P62331

Species:	Danio rerio

Chr. number:	20
Strand:	-1
Band:
Gene start:	54196543
Gene end:	54198130

Corresponding Affymetrix probe sets:	Dr.6190.1.A1_at (Zebrafish Array) Dr.6190.2.S1_at (Zebrafish Array) NM_199993_at (Zebrafish Genome Array with custom cdf files)

Cross references:	Ensembl peptide - ENSDARP00000130480 NCBI entrez gene - 336063 See in Manteia. RefSeq - NM_199993 RefSeq Peptide - NP_956287 swissprot - Q6P2U5 ZFIN ID - ZDB-GENE-030131-8007 Ensembl - ENSDARG00000101626

See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed

Ortholog prediction (from Ensembl)

Ortholog name	ID	Species
ARF6	ENSGALG00000026944	Gallus gallus
ARF6	ENSG00000165527	Homo sapiens
Arf6	ENSMUSG00000044147	Mus musculus

Paralog prediction (from Ensembl)

Paralog name	ID	Similarity(%)
arf6b / ADP-ribosylation factor 6b / ARF6* / P62330* / P62331* / ADP ribosylation factor 6*	ENSDARG00000052928	100
arf2a / ADP-ribosylation factor 2a	ENSDARG00000014763	70
arf1 / ADP-ribosylation factor 1	ENSDARG00000009484	69
arf2b / ADP-ribosylation factor 2b / Arf2* / Q8BSL7* / ADP-ribosylation factor 2 *	ENSDARG00000016393	69
arf3a / ADP-ribosylation factor 3a / ARF3* / P61204* / P61205* / ADP ribosylation factor 3*	ENSDARG00000070539	69
arf3b / ADP-ribosylation factor 3b	ENSDARG00000036998	68
arf4a / ADP-ribosylation factor 4a / ARF5* / P84084* / P84085* / ADP ribosylation factor 5*	ENSDARG00000045989	67
arf5 / ADP-ribosylation factor 5 / P84085*	ENSDARG00000070472	67
zgc:77650 / ARF5* / P84084* / P84085* / ADP ribosylation factor 5*	ENSDARG00000113899	67
arf4b / ADP-ribosylation factor 4b	ENSDARG00000100339	63
si:ch1073-165f9.2	ENSDARG00000073876	58
zgc:110286	ENSDARG00000074210	57
trim23 / tripartite motif containing 23 / P36406* / Q8BGX0* / E3 ubiquitin-protein ligase TRIM23 *	ENSDARG00000069420	50
arl3l2 / ADP-ribosylation factor-like 3, like 2	ENSDARG00000015404	45
zgc:110197 / ARL3 (1 of many) / ARL3* / P36405* / Q9WUL7* / ADP ribosylation factor like GTPase 3* / ADP-ribosylation factor-like protein 3 *	ENSDARG00000056794	45
arl2 / ADP-ribosylation factor-like 2 / Q9D0J4* / P36404* / ARL2-SNX15* / ADP ribosylation factor like GTPase 2* / ARL2-SNX15 readthrough (NMD candidate)* / ADP-ribosylation factor-like protein 2 *	ENSDARG00000069496	45
arl3 / Q1MTE5 / ADP-ribosylation factor-like 3 / P36405* / Q9WUL7* / ADP ribosylation factor like GTPase 3* / ADP-ribosylation factor-like protein 3 *	ENSDARG00000071409	45
arl3l1 / ADP-ribosylation factor-like 3, like 1	ENSDARG00000111106	44
arl14 / ADP-ribosylation factor-like 14 / Q8N4G2* / ADP ribosylation factor like GTPase 14*	ENSDARG00000063223	42
arl11 / ADP-ribosylation factor-like 11 / Q6P3A9* / Q969Q4* / ADP ribosylation factor like GTPase 11* / ADP-ribosylation factor-like protein 11 *	ENSDARG00000036637	38

Protein motifs (from Interpro)

Interpro ID	Name
IPR006689	Small GTPase superfamily, ARF/SAR type
IPR024156	Small GTPase superfamily, ARF type
IPR027417	P-loop containing nucleoside triphosphate hydrolase

Gene Ontology (GO)

Type	GO ID	Term	Ev.Code
biological_process	GO:0035622	intrahepatic bile duct development	IGI
biological_process	GO:0055113	epiboly involved in gastrulation with mouth forming second	IGI
cellular_component	GO:0005622	intracellular	IEA
molecular_function	GO:0000166	nucleotide binding	IEA
molecular_function	GO:0005525	GTP binding	IEA

Pathways (from Reactome)

Pathway description

TBC/RABGAPs

Clathrin-mediated endocytosis

MET receptor recycling

Phenotype (from MGI, Zfin or HPO)

ID	Phenotype	Definition	Genetic BG
ZFA:0000123	liver	liver decreased size , abnormal	Show
ZFA:0005169	intrahepatic bile duct	intrahepatic bile duct decreased amount , abnormal	Show

Interacting proteins (from Reactome)

Interactor ID

Name

Interaction type

No match

0 s.

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		© Olivier Tassy / Olivier Pourquie 2007-2025 contact: otassy@igbmc.fr