ENSDARG00000015536


Danio rerio

Features
Gene ID: ENSDARG00000015536
  
Biological name :sox6
  
Synonyms : sox6 / SRY (sex determining region Y)-box 6
  
Possible biological names infered from orthology : P35712 / P40645 / SRY-box 6
  
Species: Danio rerio
  
Chr. number: 7
Strand: 1
Band:
Gene start: 27250012
Gene end: 27454645
  
Corresponding Affymetrix probe sets: Dr.5234.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000153978
Ensembl peptide - ENSDARP00000156079
Ensembl peptide - ENSDARP00000091770
Ensembl peptide - ENSDARP00000124730
Ensembl peptide - ENSDARP00000142819
Ensembl peptide - ENSDARP00000142959
Ensembl peptide - ENSDARP00000145713
Ensembl peptide - ENSDARP00000150954
NCBI entrez gene - 567154     See in Manteia.
RefSeq - NM_001123009
RefSeq Peptide - NP_001116481
swissprot - A0A1D5NSY8
swissprot - F6NZ61
swissprot - F8W2H3
ZFIN ID - ZDB-GENE-081120-6
Ensembl - ENSDARG00000015536
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SOX6ENSGALG00000006074Gallus gallus
 SOX6ENSG00000110693Homo sapiens
 Sox6ENSMUSG00000051910Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
sox5 / SRY (sex determining region Y)-box 5 / P35710* / P35711* / SRY-box 5*ENSDARG0000001158254
sox13 / SRY (sex determining region Y)-box 13 / Q9UN79* / Q04891* / SRY-box 13* / Transcription factor SOX-13 *ENSDARG0000003029729


Protein motifs (from Interpro)
Interpro ID Name
 IPR009071  High mobility group box domain
 IPR027153  Transcription factor SOX-6


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007519 skeletal muscle tissue development IMP
 biological_processGO:0042694 muscle cell fate specification IMP
 biological_processGO:0060612 adipose tissue development IMP
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA


Pathways (from Reactome)
Pathway description
Deactivation of the beta-catenin transactivating complex


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000445 optic tectum optic tectum absent , abnormal
Show

 ZFA:0001056 myotome myotome mislocalised , abnormal
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 ZFA:0001094 whole organism whole organism decreased size , abnormal
whole organism increased amount , abnormal
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 ZFA:0001373 migratory slow muscle precursor cell migratory slow muscle precursor cell amount , ameliorated
Show

 ZFA:0001559 vertebral column vertebral column curved , abnormal
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 ZFA:0001656 pleuroperitoneal cavity pleuroperitoneal cavity lipid droplet decreased amount , abnormal
pleuroperitoneal cavity lipid droplet decreased size , abnormal
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 ZFA:0009116 slow muscle cell slow muscle cell increased distribution , abnormal
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 ZFA:0009117 fast muscle cell fast muscle cell nucleus absent , abnormal
fast muscle cell mislocalised , abnormal
fast muscle cell calcium-mediated signaling process quality , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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