ENSGALG00000006074


Gallus gallus

Features
Gene ID: ENSGALG00000006074
  
Biological name :SOX6
  
Synonyms : Gallus gallus SRY-box 6 (SOX6), mRNA. / SOX6
  
Possible biological names infered from orthology : P35712 / P40645 / SRY-box 6 / SRY (sex determining region Y)-box 6
  
Species: Gallus gallus
  
Chr. number: 5
Strand: -1
Band:
Gene start: 11115670
Gene end: 11366088
  
Corresponding Affymetrix probe sets: Gga.12785.1.S1_s_at (Chicken Array)   GgaAffx.3786.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000009790
Ensembl peptide - ENSGALP00000046228
NCBI entrez gene - 423068     See in Manteia.
RefSeq - XM_015286513
RefSeq - NM_001318451
RefSeq - XM_015286511
RefSeq - XM_015286512
RefSeq Peptide - NP_001305380
swissprot - F1NAU5
Ensembl - ENSGALG00000006074
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sox6ENSDARG00000015536Danio rerio
 SOX6ENSG00000110693Homo sapiens
 Sox6ENSMUSG00000051910Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SOX5 / transcription factor SOX-5 / P35711* / P35710* / SRY-box 5* / SRY (sex determining region Y)-box 5*ENSGALG0000003276860
SOX13 / SRY-box 13 / Q04891* / Q9UN79* / Transcription factor SOX-13 *ENSGALG0000000058333
SOX30 / SRY-box 30 / O94993* / Q8CGW4* / Transcription factor SOX-30 *ENSGALG0000004586010


Protein motifs (from Interpro)
Interpro ID Name
 IPR009071  High mobility group box domain
 IPR027153  Transcription factor SOX-6


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0000902 cell morphogenesis IEA
 biological_processGO:0001701 in utero embryonic development IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0009791 post-embryonic development IEA
 biological_processGO:0010468 regulation of gene expression IEA
 biological_processGO:0016458 gene silencing IEA
 biological_processGO:0021778 oligodendrocyte cell fate specification IEA
 biological_processGO:0030097 hemopoiesis IEA
 biological_processGO:0030218 erythrocyte differentiation IEA
 biological_processGO:0032332 positive regulation of chondrocyte differentiation IEA
 biological_processGO:0042692 muscle cell differentiation IEA
 biological_processGO:0045165 cell fate commitment IEA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0048709 oligodendrocyte differentiation IEA
 biological_processGO:0048821 erythrocyte development IEA
 biological_processGO:0051216 cartilage development IEA
 biological_processGO:0055007 cardiac muscle cell differentiation IEA
 biological_processGO:0061036 positive regulation of cartilage development IEA
 biological_processGO:0071560 cellular response to transforming growth factor beta stimulus IEA
 biological_processGO:2000726 negative regulation of cardiac muscle cell differentiation IEA
 biological_processGO:2000741 positive regulation of mesenchymal stem cell differentiation IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0001078 transcriptional repressor activity, RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IEA
 molecular_functionGO:0046982 protein heterodimerization activity IEA


Pathways (from Reactome)
Pathway description
Deactivation of the beta-catenin transactivating complex


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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