ENSGALG00000045860


Gallus gallus

Features
Gene ID: ENSGALG00000045860
  
Biological name :SOX30
  
Synonyms : SOX30 / SRY-box 30
  
Possible biological names infered from orthology : O94993 / Q8CGW4 / Transcription factor SOX-30
  
Species: Gallus gallus
  
Chr. number: 13
Strand: 1
Band:
Gene start: 11311536
Gene end: 11318167
  
Corresponding Affymetrix probe sets: Gga.18365.1.S1_s_at (Chicken Array)   GgaAffx.25958.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000060073
NCBI entrez gene - 416243     See in Manteia.
RefSeq - XM_414564
swissprot - A0A1L1RMR7
Ensembl - ENSGALG00000045860
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SOX30ENSG00000039600Homo sapiens
 Sox30ENSMUSG00000040489Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SOX13 / SRY-box 13 / Q04891* / Q9UN79* / Transcription factor SOX-13 *ENSGALG0000000058315
SOX5 / transcription factor SOX-5 / P35711* / P35710* / SRY-box 5* / SRY (sex determining region Y)-box 5*ENSGALG0000003276815
SOX6 / Gallus gallus SRY-box 6 (SOX6), mRNA. / P40645* / P35712* / SRY-box 6* / SRY (sex determining region Y)-box 6*ENSGALG0000000607414


Protein motifs (from Interpro)
Interpro ID Name
 IPR009071  High mobility group box domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007283 spermatogenesis IEA
 biological_processGO:0031960 response to corticosteroid IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr