ENSG00000039600


Homo sapiens

Features
Gene ID: ENSG00000039600
  
Biological name :SOX30
  
Synonyms : O94993 / SOX30 / SRY-box 30
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: -1
Band: q33.3
Gene start: 157625679
Gene end: 157671480
  
Corresponding Affymetrix probe sets: 207678_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000427984
Ensembl peptide - ENSP00000265007
Ensembl peptide - ENSP00000309343
NCBI entrez gene - 11063     See in Manteia.
OMIM - 606698
RefSeq - XM_011534420
RefSeq - NM_001308165
RefSeq - NM_007017
RefSeq - NM_178424
RefSeq - XM_005265803
RefSeq Peptide - NP_008948
RefSeq Peptide - NP_848511
RefSeq Peptide - NP_001295094
swissprot - O94993
swissprot - B4DXW7
Ensembl - ENSG00000039600
  

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SOX30ENSGALG00000045860Gallus gallus
 Sox30ENSMUSG00000040489Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SOX6 / P35712 / SRY-box 6ENSG0000011069316
SOX5 / P35711 / SRY-box 5ENSG0000013453216
SOX13 / Q9UN79 / SRY-box 13ENSG0000014384214


Protein motifs (from Interpro)
Interpro ID Name
 IPR009071  High mobility group box domain
 IPR036910  High mobility group box domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0007283 spermatogenesis IEA
 biological_processGO:0031960 response to corticosteroid IEP
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0043565 sequence-specific DNA binding IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr