ENSGALG00000032768


Gallus gallus

Features
Gene ID: ENSGALG00000032768
  
Biological name :SOX5
  
Synonyms : SOX5 / transcription factor SOX-5
  
Possible biological names infered from orthology : P35710 / P35711 / SRY-box 5 / SRY (sex determining region Y)-box 5
  
Species: Gallus gallus
  
Chr. number: 1
Strand: 1
Band:
Gene start: 65938356
Gene end: 66226982
  
Corresponding Affymetrix probe sets: Gga.16098.1.S1_at (Chicken Array)   Gga.16902.1.S1_at (Chicken Array)   Gga.5667.1.S1_at (Chicken Array)   GgaAffx.20085.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000043607
NCBI entrez gene - 418195     See in Manteia.
RefSeq - XM_015290226
RefSeq - NM_001004385
RefSeq - XM_015290224
RefSeq - XM_015290225
RefSeq - XM_015290191
RefSeq - XM_015290196
RefSeq - XM_015290204
RefSeq - XM_015290209
RefSeq - XM_015290218
RefSeq Peptide - NP_001004385
swissprot - Q6A2A9
Ensembl - ENSGALG00000032768
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sox5ENSDARG00000011582Danio rerio
 SOX5ENSG00000134532Homo sapiens
 Sox5ENSMUSG00000041540Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SOX6 / Gallus gallus SRY-box 6 (SOX6), mRNA. / P40645* / P35712* / SRY-box 6* / SRY (sex determining region Y)-box 6*ENSGALG0000000607461
SOX13 / SRY-box 13 / Q04891* / Q9UN79* / Transcription factor SOX-13 *ENSGALG0000000058337
SOX30 / SRY-box 30 / O94993* / Q8CGW4* / Transcription factor SOX-30 *ENSGALG0000004586010


Protein motifs (from Interpro)
Interpro ID Name
 IPR009071  High mobility group box domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0032332 positive regulation of chondrocyte differentiation IEA
 biological_processGO:0055059 asymmetric neuroblast division IEA
 biological_processGO:0061036 positive regulation of cartilage development IEA
 biological_processGO:0071560 cellular response to transforming growth factor beta stimulus IEA
 biological_processGO:2000741 positive regulation of mesenchymal stem cell differentiation IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr