ENSDARG00000015862


Danio rerio

Features
Gene ID: ENSDARG00000015862
  
Biological name :rpl5b
  
Synonyms : ribosomal protein L5b / rpl5b
  
Possible biological names infered from orthology : P46777 / P47962 / ribosomal protein L5 / RPL5
  
Species: Danio rerio
  
Chr. number: 6
Strand: 1
Band:
Gene start: 29086594
Gene end: 29097393
  
Corresponding Affymetrix probe sets: Dr.8.2.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000106359
NCBI entrez gene - 415196     See in Manteia.
RefSeq - NM_001002106
RefSeq Peptide - NP_001002106
swissprot - Q6IQB1
ZFIN ID - ZDB-GENE-040625-93
Ensembl - ENSDARG00000015862
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RPL5ENSGALG00000005922Gallus gallus
 RPL5ENSG00000122406Homo sapiens
 Rpl5ENSMUSG00000058558Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rpl5a / ribosomal protein L5a / RPL5* / P46777* / P47962* / ribosomal protein L5*ENSDARG0000002019792


Protein motifs (from Interpro)
Interpro ID Name
 IPR005485  Ribosomal protein L5 eukaryotic/L18 archaeal
 IPR025607  Ribosomal protein L5 eukaryotic/L18 archaeal, C-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000027 ribosomal large subunit assembly IBA
 biological_processGO:0006412 translation IBA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0022625 cytosolic large ribosomal subunit IBA
 molecular_functionGO:0003735 structural constituent of ribosome IBA
 molecular_functionGO:0008097 5S rRNA binding IBA


Pathways (from Reactome)
Pathway description
L13a-mediated translational silencing of Ceruloplasmin expression
SRP-dependent cotranslational protein targeting to membrane
Major pathway of rRNA processing in the nucleolus and cytosol
Formation of a pool of free 40S subunits
GTP hydrolysis and joining of the 60S ribosomal subunit
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000006 ball ball increased size , abnormal
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 ZFA:0000029 hindbrain hindbrain undulate , abnormal
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 ZFA:0000035 lens lens decreased size , abnormal
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 ZFA:0000042 midbrain hindbrain boundary midbrain hindbrain boundary aplastic , abnormal
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 ZFA:0000100 cerebellum cerebellum aplastic , abnormal
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 ZFA:0000106 extension extension decreased length , abnormal
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 ZFA:0000108 fin fin deformed , abnormal
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 ZFA:0000110 fourth ventricle fourth ventricle opaque , abnormal
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 ZFA:0000138 otic placode otic placode decreased size , abnormal
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 ZFA:0000152 retina retina decreased size , abnormal
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 ZFA:0000445 optic tectum optic tectum increased size , abnormal
optic tectum opaque , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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