ENSDARG00000016059


Danio rerio

Features
Gene ID: ENSDARG00000016059
  
Biological name :rab5b
  
Synonyms : rab5b / RAB5B, member RAS oncogene family
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 9
Strand: 1
Band:
Gene start: 27750490
Gene end: 27790405
  
Corresponding Affymetrix probe sets: Dr.13182.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000116426
Ensembl peptide - ENSDARP00000154095
Ensembl peptide - ENSDARP00000004030
Ensembl peptide - ENSDARP00000110572
NCBI entrez gene - 405821     See in Manteia.
RefSeq - NM_212885
RefSeq Peptide - NP_998050
swissprot - A8WHY1
swissprot - F1QW59
swissprot - Q6NYD6
ZFIN ID - ZDB-GENE-040426-2593
Ensembl - ENSDARG00000016059
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rab5c / RAB5C, member RAS oncogene family / P35278* / P51148*ENSDARG0000002671274
rab5aa / RAB5A, member RAS oncogene family, a / Rab5a* / Q9CQD1* / AC099811.2* / Ras-related protein Rab-5A *ENSDARG0000001860272
rab5ab / RAB5A, member RAS oncogene family, b / Rab5a* / Q9CQD1* / AC099811.2* / Ras-related protein Rab-5A *ENSDARG0000000725771
rab22a / RAB22A, member RAS oncogene family / P35285* / Q9UL26*ENSDARG0000001580744
LO018490.1 / RAB31* / Q13636* / RAB31, member RAS oncogene family*ENSDARG0000011583242
RAB21 / zgc:154045 / P35282* / Q9UL25* / RAB21, member RAS oncogene family*ENSDARG0000010075239
rab20 / RAB20, member RAS oncogene family / P35295* / Q9NX57* / Ras-related protein Rab-20 *ENSDARG0000000504933
Q6IMK3 / dnajc27 / DnaJ (Hsp40) homolog, subfamily C, member 27 / Q8CFP6* / Q9NZQ0* / DnaJ homolog subfamily C member 27 * / DnaJ heat shock protein family (Hsp40) member C27*ENSDARG0000007091625


Protein motifs (from Interpro)
Interpro ID Name
 IPR001806  Small GTPase superfamily
 IPR005225  Small GTP-binding protein domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0003924 GTPase activity IEA
 molecular_functionGO:0005525 GTP binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain morphology , abnormal
brain necrotic , abnormal
Show

 ZFA:0000109 forebrain forebrain decreased size , abnormal
Show

 ZFA:0000135 notochord notochord curved , abnormal
Show

 ZFA:0000155 somite somite shape , abnormal
somite decreased thickness , abnormal
Show

 ZFA:0001094 whole organism whole organism anterior-posterior axis curved , abnormal
whole organism anterior-posterior axis decreased length , abnormal
Show

 ZFA:0005277 skeletal muscle skeletal muscle morphology , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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