ENSDARG00000016979


Danio rerio

Features
Gene ID: ENSDARG00000016979
  
Biological name :pmpcb
  
Synonyms : peptidase (mitochondrial processing) beta / pmpcb
  
Possible biological names infered from orthology : O75439 / peptidase, mitochondrial processing beta subunit / Q9CXT8
  
Species: Danio rerio
  
Chr. number: 4
Strand: 1
Band:
Gene start: 1761029
Gene end: 1771308
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000008048
NCBI entrez gene - 503532     See in Manteia.
RefSeq - NM_001012496
RefSeq Peptide - NP_001012514
swissprot - Q1L8E2
ZFIN ID - ZDB-GENE-050220-10
Ensembl - ENSDARG00000016979
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PMPCBENSGALG00000008280Gallus gallus
 PMPCBENSG00000105819Homo sapiens
 PmpcbENSMUSG00000029017Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
uqcrc1 / ubiquinol-cytochrome c reductase core protein 1 / P31930*ENSDARG0000005230454


Protein motifs (from Interpro)
Interpro ID Name
 IPR001431  Peptidase M16, zinc-binding site
 IPR007863  Peptidase M16, C-terminal
 IPR011249  Metalloenzyme, LuxS/M16 peptidase-like
 IPR011765  Peptidase M16, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c IBA
 biological_processGO:0006508 proteolysis IEA
 biological_processGO:0006627 protein processing involved in protein targeting to mitochondrion IEA
 biological_processGO:0009060 aerobic respiration IBA
 biological_processGO:0016485 protein processing IBA
 cellular_componentGO:0005750 mitochondrial respiratory chain complex III IBA
 cellular_componentGO:0017087 mitochondrial processing peptidase complex IEA
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0004222 metalloendopeptidase activity IBA
 molecular_functionGO:0008270 zinc ion binding IBA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Processing of SMDT1


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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