ENSGALG00000008280


Gallus gallus

Features
Gene ID: ENSGALG00000008280
  
Biological name :PMPCB
  
Synonyms : peptidase, mitochondrial processing beta subunit / PMPCB
  
Possible biological names infered from orthology : O75439 / peptidase (mitochondrial processing) beta / Q9CXT8
  
Species: Gallus gallus
  
Chr. number: 1
Strand: 1
Band:
Gene start: 12968095
Gene end: 12977041
  
Corresponding Affymetrix probe sets: Gga.7638.1.A1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000013458
Ensembl peptide - ENSGALP00000062878
Ensembl peptide - ENSGALP00000058585
NCBI entrez gene - 417718     See in Manteia.
RefSeq - NM_001199472
RefSeq - XM_015275727
RefSeq Peptide - NP_001186401
swissprot - A0A1L1RVM0
swissprot - A0A1D5Q015
swissprot - F1P3S2
Ensembl - ENSGALG00000008280
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pmpcbENSDARG00000016979Danio rerio
 PMPCBENSG00000105819Homo sapiens
 PmpcbENSMUSG00000029017Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
UQCRC1 / ubiquinol-cytochrome c reductase core protein 1 / P31930* / Q9CZ13*ENSGALG0000000578954


Protein motifs (from Interpro)
Interpro ID Name
 IPR001431  Peptidase M16, zinc-binding site
 IPR007863  Peptidase M16, C-terminal
 IPR011249  Metalloenzyme, LuxS/M16 peptidase-like
 IPR011765  Peptidase M16, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c IBA
 biological_processGO:0006508 proteolysis IEA
 biological_processGO:0006627 protein processing involved in protein targeting to mitochondrion IEA
 biological_processGO:0009060 aerobic respiration IBA
 biological_processGO:0016485 protein processing IBA
 cellular_componentGO:0005739 mitochondrion IEA
 cellular_componentGO:0005743 mitochondrial inner membrane IEA
 cellular_componentGO:0005750 mitochondrial respiratory chain complex III IBA
 cellular_componentGO:0017087 mitochondrial processing peptidase complex IEA
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0004222 metalloendopeptidase activity IEA
 molecular_functionGO:0008270 zinc ion binding IBA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Processing of SMDT1


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000001950 PMPCA / peptidase, mitochondrial processing alpha subunit / Q10713* / Q9DC61* / peptidase (mitochondrial processing) alpha*  / complex
 ENSGALG00000013853 AFG3L2 / AFG3 like matrix AAA peptidase subunit 2 / Q8JZQ2* / Q9Y4W6* / AFG3-like protein 2 *  / reaction
 ENSGALG00000014567 PHB2 / prohibitin-2 / O35129* / Q99623*  / reaction
 ENSGALG00000011897 SMDT1 / single-pass membrane protein with aspartate rich tail 1 / Q9DB10* / Q9H4I9*  / reaction
 ENSGALG00000038604 PHB / P84173 / Prohibitin / P35232* / P67778*  / reaction






 

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