ENSDARG00000017762


Danio rerio

Features
Gene ID: ENSDARG00000017762
  
Biological name :srrt
  
Synonyms : Q66I22 / serrate RNA effector molecule homolog (Arabidopsis) / srrt
  
Possible biological names infered from orthology : Q99MR6 / Q9BXP5 / serrate, RNA effector molecule / Serrate RNA effector molecule homolog
  
Species: Danio rerio
  
Chr. number: 5
Strand: -1
Band:
Gene start: 4253929
Gene end: 4297459
  
Corresponding Affymetrix probe sets: Dr.4841.1.S1_at (Zebrafish Array)   NM_173238_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000005886
NCBI entrez gene - 192311     See in Manteia.
RefSeq - NM_173238
RefSeq Peptide - NP_775345
swissprot - Q66I22
ZFIN ID - ZDB-GENE-020419-13
Ensembl - ENSDARG00000017762
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SRRTENSG00000087087Homo sapiens
 SrrtENSMUSG00000037364Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007042  Arsenite-resistance protein 2
 IPR021933  Protein of unknown function DUF3546


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0008283 cell proliferation ISS
 biological_processGO:0031047 gene silencing by RNA IEA
 biological_processGO:0031053 primary miRNA processing ISS
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm ISS
 cellular_componentGO:0005737 cytoplasm ISS


Pathways (from Reactome)
Pathway description
RNA polymerase II transcribes snRNA genes
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain necrotic , abnormal
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 ZFA:0000012 central nervous system central nervous system necrotic , abnormal
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 ZFA:0000054 pericardium pericardium edematous , abnormal
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 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000114 heart heart quality , abnormal
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 ZFA:0001094 whole organism whole organism curved dorsal , abnormal
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 ZFA:0001114 head head decreased size , abnormal
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 ZFA:0001115 trunk trunk necrotic , abnormal
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 ZFA:0001227 mandibular arch skeleton mandibular arch skeleton increased thickness , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000014898 ncbp2 / Q8JGR6 / nuclear cap binding protein subunit 2 / Q9CQ49* / NCBP2L* / P52298* / A6PVI3* / nuclear cap binding protein subunit 2 like*  / complex






 

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